Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29j16
         (569 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          25   1.3  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    25   2.3  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    23   9.3  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    23   9.3  

>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 20/53 (37%), Positives = 33/53 (62%)
 Frame = +2

Query: 194 TRLTPSKLNDTHIRIIAYHQPTR*CSMNR*EKNHLRVLKNLGVSLHHNPWSLT 352
           +R++PS++ DT  + + YH+PT  CS++  E N LRV    G + H +  S+T
Sbjct: 293 SRMSPSEM-DT--QPVMYHEPTFWCSISYYELN-LRV----GETFHASQPSIT 337


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = -2

Query: 184 CDSLYI*SGYC--EKTAPFWPIQICTHCLA 101
           C  L+     C  +++ P WP  +C+ C A
Sbjct: 34  CQKLHFRDQVCCVQRSPPHWPYLLCSSCSA 63


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 287 KNHLRVLKNLGVSLHHNPWS 346
           + +L VLKN      H PW+
Sbjct: 430 RRYLPVLKNFPTRFIHEPWN 449


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 299 RVLKNLGVSLHHNPWSLTCWLVAVSIILAK 388
           R LK LGV LH+N      W+  V  ++ K
Sbjct: 743 RTLKYLGVRLHYN----LSWVPHVKAVIQK 768


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,610
Number of Sequences: 2352
Number of extensions: 12205
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 53824896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)