Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29j16
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z54342-4|CAA91150.1|  447|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U22832-3|AAA64508.2|  359|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL023821-2|CAA19437.2|  355|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical
           protein ZK262.10 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 178 SLYI*SGYCEKTAPFWPIQIC 116
           S Y+  GY EKT+P+ P  +C
Sbjct: 73  SYYVVDGYFEKTSPYAPFVLC 93


>Z54342-4|CAA91150.1|  447|Caenorhabditis elegans Hypothetical
           protein C08H9.7 protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 142 LFSHNNLIKCIGCRTILDKINAKQIKRHTYSDYCISSTNAL 264
           +FS   ++ C  C+T+   INA  +   T S + + S   +
Sbjct: 50  VFSKLIILACCKCQTVSTSINALMLNNSTTSQHALKSNETI 90


>U22832-3|AAA64508.2|  359|Caenorhabditis elegans Hypothetical
           protein C09F5.3 protein.
          Length = 359

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 106 DNEYKFELAKTGLFSHNNLIKCIGCRTILDKINAKQIKRHTYSDY 240
           D+ +    A +      NL+KC  C T+   I+  Q++ HT S++
Sbjct: 57  DDSHSNSPASSKSIKQENLLKCELCSTVCSSIS--QLQSHTLSEH 99


>AL023821-2|CAA19437.2|  355|Caenorhabditis elegans Hypothetical
           protein Y102A5B.3 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 133 KTGLFSHNNLIKCIGCRTILDKINAKQIKRHTYS--DYCISSTNALMFNEPM 282
           KTGL +  N I C    TI DK   K    H Y+  D   +   A  F +PM
Sbjct: 212 KTGLCNQQNSILCELPPTIYDKNCEKNFNNHCYTRFDDAYTVAEAHEFCKPM 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,287,665
Number of Sequences: 27780
Number of extensions: 275844
Number of successful extensions: 669
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)