Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29j12
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    81   1e-16
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    36   0.007
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   3.0  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    27   3.0  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    24   3.2  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    26   4.0  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   9.3  

>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 36/53 (67%), Positives = 44/53 (83%)
 Frame = +1

Query: 481 GRKVRVYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVXVCSDQLTHSRKGRTV 639
           GR VRVY+DG++D+FH GH RQL+QAK VFPNV+LIV + +DQLTH  KG TV
Sbjct: 91  GRPVRVYADGVFDLFHIGHMRQLEQAKKVFPNVHLIVGLPNDQLTHRLKGLTV 143


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = +1

Query: 466 LAGTAGRKVRVYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVXVCSDQLTHSRKGRTV 639
           +A ++  K R++ DG  D FH GH+  + QAK +     L++ + SD+     KG  V
Sbjct: 1   MASSSNIKHRLWLDGCMDFFHYGHSNAILQAKQL--GETLVIGIHSDEEITLNKGPPV 56



 Score = 29.9 bits (64), Expect = 0.33
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 496 VYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVXVCSDQ 609
           +Y DG +D+F + H   L+    +FP + ++  + +D+
Sbjct: 205 IYIDGDWDLFTEKHISALELCTRMFPGIPIMAGIFADE 242


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
 Frame = +1

Query: 322 NGYKKNGYVNHECTESVSLRH-----AAPFS---TDPMALAERDSCHYGRIPRAAALAGT 477
           N Y    +++H+C E  S  H       P +    D       + CH+G+ PR     GT
Sbjct: 157 NTYFDKTHIDHKCKEHCSCHHDKFPRPVPHNGTKPDHKPWKHEEHCHHGKFPRPVPHNGT 216


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 298 NGKLENSLNGYKKNGYVNHECTESVSLRHAAPFSTDPMALAER 426
           N  ++ SL+  K+  Y+  EC E+  LRH    S+  + +  R
Sbjct: 108 NTYIQKSLHRLKEVYYIYRECAETWQLRHLRVASSQQLPVGLR 150


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect(2) = 3.2
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
 Frame = +1

Query: 274 PPLTNGHT-NGKLENSLNGYKKNGYVNHECTESVSLRHAAPFSTDPMAL 417
           PP  N    NG    + N Y  +GY N      +    ++ F  DP  L
Sbjct: 53  PPFVNTTAPNGTCLGNYNEYLPSGYYNATDRPKIHFTPSSGFMNDPNGL 101



 Score = 20.6 bits (41), Expect(2) = 3.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 496 VYSDGIYDMFHQ 531
           VY+ G+Y MF Q
Sbjct: 102 VYTGGVYHMFFQ 113


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 210 IYKNFTLKKKEDFVHDVISSDASANEWTHEREAG-KFIKRIQKKW 341
           IYKN+      + + D+  +D+ +  W+   EA  +F+  +   W
Sbjct: 85  IYKNYDASLLGNALLDIRKNDSYSTSWSRSLEAAHRFLSSLVNSW 129


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 41  HSINNSFLLSSLTR*LD-ENIDVCY--VTLLKQHFDTFGNFTFLITVKYNARTF 193
           H + ++F L+ L    + + +D  Y  V LLK HF  F +FT    V Y  R F
Sbjct: 314 HRLLDAFKLADLGESNESQKVDKLYAEVLLLKIHFLLFESFTAESVVDYVRRCF 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,344
Number of Sequences: 5004
Number of extensions: 43179
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)