Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29j12
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0546 + 4024793-4025025,4026259-4026372,4026482-4026577,402... 86 2e-17
10_08_1050 - 22559518-22559613,22559736-22559846,22559966-225600... 79 3e-15
08_01_0407 - 3613417-3613506,3613603-3613713,3613789-3613857,361... 50 1e-06
10_07_0037 - 12239296-12239367,12239484-12239606,12239699-122397... 45 4e-05
08_01_0784 + 7600691-7601055,7601530-7601765,7601896-7602068,760... 45 4e-05
11_01_0129 - 1073002-1073073,1073463-1073585,1073667-1073732,107... 44 1e-04
01_06_0864 - 32546696-32546803,32546881-32546961,32547134-325472... 31 1.0
06_01_0673 - 4908496-4908563,4908646-4908712,4908821-4908922,490... 29 4.1
06_02_0039 - 10873398-10873680,10874505-10874671,10874807-108749... 28 7.2
>02_01_0546 +
4024793-4025025,4026259-4026372,4026482-4026577,
4026780-4026822,4026958-4027098,4027235-4027315,
4028032-4028130,4028225-4028350
Length = 310
Score = 86.2 bits (204), Expect = 2e-17
Identities = 35/53 (66%), Positives = 44/53 (83%)
Frame = +1
Query: 481 GRKVRVYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVXVCSDQLTHSRKGRTV 639
GR +RVY+DGIYD+FH GHA+ L+QAK +FPN YL+V C+D+LTH KGRTV
Sbjct: 50 GRPIRVYADGIYDLFHFGHAKSLEQAKRLFPNTYLLVGCCNDELTHKYKGRTV 102
>10_08_1050 -
22559518-22559613,22559736-22559846,22559966-22560034,
22560172-22560327,22560416-22560458,22560566-22560661,
22561136-22561249,22561390-22561574
Length = 289
Score = 79.0 bits (186), Expect = 3e-15
Identities = 33/52 (63%), Positives = 43/52 (82%)
Frame = +1
Query: 484 RKVRVYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVXVCSDQLTHSRKGRTV 639
R VRVY+DGI+D+FH GHAR L+QAK +FPN YL+V C+D+LT+ KG+TV
Sbjct: 35 RPVRVYADGIFDLFHFGHARALEQAKLLFPNTYLLVGCCNDELTNRYKGKTV 86
>08_01_0407 -
3613417-3613506,3613603-3613713,3613789-3613857,
3613936-3614091,3614156-3614222,3614375-3614470,
3614976-3615142
Length = 251
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +1
Query: 481 GRKVRVYSDGIYDMFHQGHARQLQQAK 561
GR VRVY+DGIYD+FH GHAR L+QAK
Sbjct: 28 GRPVRVYADGIYDLFHFGHARALEQAK 54
>10_07_0037 -
12239296-12239367,12239484-12239606,12239699-12239758,
12239892-12240009,12240133-12240200,12240307-12240378,
12240677-12240834,12240964-12241199,12241643-12242007
Length = 423
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/52 (46%), Positives = 31/52 (59%)
Frame = +1
Query: 484 RKVRVYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVXVCSDQLTHSRKGRTV 639
R VRVY DG +D+ H GHA L+QAK + L+V V SD+ + KG V
Sbjct: 67 RPVRVYMDGCFDLMHYGHANALRQAKLL--GDQLVVGVVSDEEIVANKGPPV 116
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +1
Query: 469 AGTAGRKVRVYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVXVCSDQLTHSRKG 630
A + G +V VY DG +D+FH GH L+ A+ + +L+V V DQ R+G
Sbjct: 254 APSPGARV-VYIDGAFDLFHAGHVEILRSARQL--GDFLLVGVHDDQAIRDRRG 304
>08_01_0784 +
7600691-7601055,7601530-7601765,7601896-7602068,
7602344-7602430,7602538-7602605,7602732-7602849,
7602983-7603042,7603135-7603257,7603377-7603448
Length = 433
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/52 (46%), Positives = 31/52 (59%)
Frame = +1
Query: 484 RKVRVYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVXVCSDQLTHSRKGRTV 639
R VRVY DG +D+ H GHA L+QAK + L+V V SD+ + KG V
Sbjct: 67 RPVRVYMDGCFDLMHYGHANALRQAKLL--GDQLVVGVVSDEEIVANKGPPV 116
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +1
Query: 496 VYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVXVCSDQLTHSRKG 630
VY DG +D+FH GH L+ A+ + +L+V V DQ R+G
Sbjct: 272 VYIDGAFDLFHAGHVEILRSARQL--GDFLLVGVHDDQAIRDRRG 314
>11_01_0129 -
1073002-1073073,1073463-1073585,1073667-1073732,
1074227-1074347,1074536-1074603,1074792-1074863,
1076045-1076222,1077554-1077888
Length = 344
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/52 (46%), Positives = 29/52 (55%)
Frame = +1
Query: 484 RKVRVYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVXVCSDQLTHSRKGRTV 639
R VRVY DG +DM H GH L+QA+ + LIV V SD + KG V
Sbjct: 57 RPVRVYMDGCFDMMHYGHCNALRQARALGDE--LIVGVVSDHEITANKGPPV 106
Score = 36.3 bits (80), Expect = 0.021
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 496 VYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVXVCSDQLTHSRKG 630
VY DG +D+FH GH L+ A+ + +L+V + +DQ S +G
Sbjct: 180 VYIDGAFDLFHAGHVEILRLAREL--GDFLLVGIHTDQTISSTRG 222
>01_06_0864 - 32546696-32546803,32546881-32546961,32547134-32547250,
32548264-32548338,32548618-32548680,32549122-32549187,
32549254-32549325,32549403-32549504,32549588-32549765,
32549871-32549926,32551578-32551688,32551797-32551865,
32551960-32552068,32552176-32552327,32552398-32552475,
32554257-32554379,32555527-32555646,32555729-32555809,
32555881-32556027,32556112-32556190,32557223-32557297,
32558004-32558113,32558984-32559082,32559700-32559815,
32559914-32560022,32560098-32560229,32560389-32560591,
32561428-32561585,32561668-32561797,32562529-32562607,
32562806-32562829
Length = 1073
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 89 DENIDVCYVTLLKQHFDTFGN-FTFLITVKYNARTFFDIVLDIQKLYVKKKRRF 247
D + VC+ + KQH D +G F FLI + T DI + IQK + +F
Sbjct: 959 DRLVHVCHFIIEKQHIDYYGEPFFFLIR---DGETLSDIKVRIQKKLLVSDEQF 1009
>06_01_0673 -
4908496-4908563,4908646-4908712,4908821-4908922,
4909006-4909119,4909510-4909683,4909769-4910200,
4910855-4911295
Length = 465
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 454 RAAALAGTAGRKVRVYSDGIYDMFHQGHAR 543
RA L GT + V+SDG+ ++ +GH +
Sbjct: 152 RAGVLVGTGMGGLTVFSDGVQNLIEKGHRK 181
>06_02_0039 -
10873398-10873680,10874505-10874671,10874807-10874900,
10874988-10875196,10875283-10875434,10876673-10876763
Length = 331
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 448 IPRAAALAGTAGRKVRVYSDGIYDMFHQGHARQLQQAKTVFPNVYL 585
I R + AG AGR + +Y+ FH + QQ + P+V L
Sbjct: 20 IKRKDSDAGEAGRALEELRGSLYNEFHTSEGAKRQQQRFCGPSVAL 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,908,737
Number of Sequences: 37544
Number of extensions: 282937
Number of successful extensions: 802
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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