Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29j12
(641 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29378-8|ABA54423.1| 354|Caenorhabditis elegans Hypothetical pr... 105 4e-23
U29378-7|AAA68722.2| 362|Caenorhabditis elegans Hypothetical pr... 105 4e-23
AC024751-2|AAN39663.1| 272|Caenorhabditis elegans Hypothetical ... 97 1e-20
AC006632-3|AAK85467.1| 183|Caenorhabditis elegans Hypothetical ... 87 1e-17
AC087079-11|AAK27869.1| 370|Caenorhabditis elegans Hypothetical... 42 3e-04
U39678-5|ABP49528.1| 213|Caenorhabditis elegans Hypothetical pr... 37 0.011
U39678-4|AAK39211.2| 330|Caenorhabditis elegans Hypothetical pr... 37 0.011
Z75552-4|CAA99942.1| 624|Caenorhabditis elegans Hypothetical pr... 31 0.53
AL034393-2|CAA22309.1| 220|Caenorhabditis elegans Hypothetical ... 29 2.8
U70852-3|AAK29822.1| 836|Caenorhabditis elegans Hypothetical pr... 28 6.5
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr... 28 6.5
>U29378-8|ABA54423.1| 354|Caenorhabditis elegans Hypothetical
protein F08C6.2b protein.
Length = 354
Score = 105 bits (251), Expect = 4e-23
Identities = 50/92 (54%), Positives = 64/92 (69%), Gaps = 1/92 (1%)
Frame = +1
Query: 367 SVSLRHAAPFSTDPMALAERDSCHYGR-IPRAAALAGTAGRKVRVYSDGIYDMFHQGHAR 543
S++ APFS + +A+ R++ Y + I A A A AGR VR+Y+DGIYD+FH GHA
Sbjct: 31 SLASDEPAPFSDEALAITTREAVDYSKKITLAMAEANEAGRPVRIYADGIYDLFHHGHAN 90
Query: 544 QLQQAKTVFPNVYLIVXVCSDQLTHSRKGRTV 639
QL+Q K +FPNVYLIV VC D+ TH KGRTV
Sbjct: 91 QLRQVKKMFPNVYLIVGVCGDRDTHKYKGRTV 122
>U29378-7|AAA68722.2| 362|Caenorhabditis elegans Hypothetical
protein F08C6.2a protein.
Length = 362
Score = 105 bits (251), Expect = 4e-23
Identities = 50/92 (54%), Positives = 64/92 (69%), Gaps = 1/92 (1%)
Frame = +1
Query: 367 SVSLRHAAPFSTDPMALAERDSCHYGR-IPRAAALAGTAGRKVRVYSDGIYDMFHQGHAR 543
S++ APFS + +A+ R++ Y + I A A A AGR VR+Y+DGIYD+FH GHA
Sbjct: 39 SLASDEPAPFSDEALAITTREAVDYSKKITLAMAEANEAGRPVRIYADGIYDLFHHGHAN 98
Query: 544 QLQQAKTVFPNVYLIVXVCSDQLTHSRKGRTV 639
QL+Q K +FPNVYLIV VC D+ TH KGRTV
Sbjct: 99 QLRQVKKMFPNVYLIVGVCGDRDTHKYKGRTV 130
>AC024751-2|AAN39663.1| 272|Caenorhabditis elegans Hypothetical
protein Y18H1A.11 protein.
Length = 272
Score = 96.7 bits (230), Expect = 1e-20
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Frame = +1
Query: 358 CTESVSLRHAAPFSTDPMALAERDSCHYG-RIPRAAALAGTAGRKVRVYSDGIYDMFHQG 534
C ++++ APFS D + +R++ Y +I A++G R VRVY+DG+YDMFH G
Sbjct: 2 CDDTLAFCSPAPFSDDVEVIKQREAIDYSTQITLEDAISGNVTRPVRVYADGVYDMFHYG 61
Query: 535 HARQLQQAKTVFPNVYLIVXVCSDQLTHSRKGRTV 639
HA Q Q K PNVYLIV VCSD+ T KGRTV
Sbjct: 62 HANQFLQIKQTLPNVYLIVGVCSDEETMKNKGRTV 96
>AC006632-3|AAK85467.1| 183|Caenorhabditis elegans Hypothetical
protein F28A10.10 protein.
Length = 183
Score = 87.0 bits (206), Expect = 1e-17
Identities = 44/85 (51%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +1
Query: 388 APFSTDPMALAERDSCHYG-RIPRAAALAGTAGRKVRVYSDGIYDMFHQGHARQLQQAKT 564
AP + D +A+R+ Y +I A G + R +RVY+DGIYDMFH GHA+QL Q K
Sbjct: 7 APLTDDSTVIAKRNLIDYSEKISMENARNGLSSRPIRVYADGIYDMFHYGHAKQLLQIKQ 66
Query: 565 VFPNVYLIVXVCSDQLTHSRKGRTV 639
+FP VYLIV VCSD+ T KG TV
Sbjct: 67 MFPMVYLIVGVCSDENTLKFKGPTV 91
>AC087079-11|AAK27869.1| 370|Caenorhabditis elegans Hypothetical
protein Y37E3.11 protein.
Length = 370
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/49 (48%), Positives = 29/49 (59%)
Frame = +1
Query: 493 RVYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVXVCSDQLTHSRKGRTV 639
RV++DG YDM H GHA QL+QAK LIV V +D+ KG V
Sbjct: 14 RVWADGCYDMVHFGHANQLRQAKQF--GQKLIVGVHNDEEIRLHKGPPV 60
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = +1
Query: 496 VYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVXVCSDQLTHSRKG 630
VY G +D+FH GH L++AK YLIV + SDQ + KG
Sbjct: 206 VYVTGSFDLFHIGHLAFLEKAKEF--GDYLIVGILSDQTVNQYKG 248
>U39678-5|ABP49528.1| 213|Caenorhabditis elegans Hypothetical
protein C39D10.3b protein.
Length = 213
Score = 37.1 bits (82), Expect = 0.011
Identities = 25/80 (31%), Positives = 34/80 (42%)
Frame = +1
Query: 391 PFSTDPMALAERDSCHYGRIPRAAALAGTAGRKVRVYSDGIYDMFHQGHARQLQQAKTVF 570
P S +P+ +Y P KV VY G +D+FH GH L+ AK +
Sbjct: 28 PLSNEPVISVSLFKQNYTFAPVVIGRKPKVTDKV-VYVSGAFDLFHAGHLSFLEAAKDL- 85
Query: 571 PNVYLIVXVCSDQLTHSRKG 630
YLIV + D + KG
Sbjct: 86 -GDYLIVGIVGDDDVNEEKG 104
>U39678-4|AAK39211.2| 330|Caenorhabditis elegans Hypothetical
protein C39D10.3a protein.
Length = 330
Score = 37.1 bits (82), Expect = 0.011
Identities = 25/80 (31%), Positives = 34/80 (42%)
Frame = +1
Query: 391 PFSTDPMALAERDSCHYGRIPRAAALAGTAGRKVRVYSDGIYDMFHQGHARQLQQAKTVF 570
P S +P+ +Y P KV VY G +D+FH GH L+ AK +
Sbjct: 145 PLSNEPVISVSLFKQNYTFAPVVIGRKPKVTDKV-VYVSGAFDLFHAGHLSFLEAAKDL- 202
Query: 571 PNVYLIVXVCSDQLTHSRKG 630
YLIV + D + KG
Sbjct: 203 -GDYLIVGIVGDDDVNEEKG 221
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +1
Query: 484 RKVRVYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVXVCSD 606
+K RVY+DG +D H +AR L AK LIV + SD
Sbjct: 16 KKARVYTDGCFDFVHFANARLLWPAKQY--GKKLIVGIHSD 54
>Z75552-4|CAA99942.1| 624|Caenorhabditis elegans Hypothetical
protein W04D2.4 protein.
Length = 624
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -2
Query: 376 AKPIPCIRDLRIHFFCIRLMNFPASRSCVHSLAEASLLMTSCTK 245
+ P+ I LR HF I N A R C E L+ SCTK
Sbjct: 218 SSPMEIIGFLRHHFLSISADNIYAQRVCFVDTDELKTLLVSCTK 261
>AL034393-2|CAA22309.1| 220|Caenorhabditis elegans Hypothetical
protein Y18D10A.2 protein.
Length = 220
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 356 NARNRFRYDTRPRSVRIPWRWLNGIR 433
N N +RY+ P S +PW +NG R
Sbjct: 162 NDENSYRYNVAPHSAWLPWIQVNGER 187
>U70852-3|AAK29822.1| 836|Caenorhabditis elegans Hypothetical
protein F45E4.3b protein.
Length = 836
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 439 YGRIPRAAALAGTAGRKVRVYSDGIYDMFHQGHARQLQQAKTVF 570
YG IPR++ TA R+ R IY+ Q H L+ K F
Sbjct: 362 YGSIPRSSR-ERTASRRYREQQQQIYNQMPQNHNDLLEITKKYF 404
>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical
protein F45E4.3a protein.
Length = 1231
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 439 YGRIPRAAALAGTAGRKVRVYSDGIYDMFHQGHARQLQQAKTVF 570
YG IPR++ TA R+ R IY+ Q H L+ K F
Sbjct: 362 YGSIPRSSR-ERTASRRYREQQQQIYNQMPQNHNDLLEITKKYF 404
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,827,575
Number of Sequences: 27780
Number of extensions: 244805
Number of successful extensions: 709
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -