Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29j10
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              24   1.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   6.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.1  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    21   8.1  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    21   8.1  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -1

Query: 621 ADCRVPVSRYGSYLCDFFGCCNGFRHSFKFLFNG 520
           AD RV      +Y C   G C    H+ K+   G
Sbjct: 61  ADGRVSCPVLRAYTCPICGACGDIAHTVKYCPKG 94


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 585 YLCDFFGCCNGFRHS 541
           ++  FFGCC   R S
Sbjct: 63  FVISFFGCCGAIRES 77


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 323 TPLATVTPSFVIFGDPQ 273
           +P A + P  V++G+PQ
Sbjct: 98  SPSAALQPQHVVYGNPQ 114


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 672 CDYSIPTYLLHCISNELADCRVPVSRY 592
           CD  +   +L C ++ L+ C + + RY
Sbjct: 111 CDSWVSLDILLCTASILSLCAISIDRY 137


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -1

Query: 585 YLCDFFGCCNGFRHSFKFLFNGIYGE 508
           Y CD  G   G+ H  K      YGE
Sbjct: 232 YTCDICGKSFGYNHVLKLHQVAHYGE 257


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 72  FKNVASTSCCSSNCFS 119
           FK   + S C++NC S
Sbjct: 51  FKGQVNDSACAANCLS 66


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 72  FKNVASTSCCSSNCFS 119
           FK   + S C++NC S
Sbjct: 51  FKGQVNDSACAANCLS 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.133    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,786
Number of Sequences: 438
Number of extensions: 3686
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)