Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29j07
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914...    36   0.028
06_01_0614 + 4448129-4448157,4448733-4449231,4449512-4449550,444...    27   9.7  

>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
            10791796-10791903,10793133-10797686,10798347-10798461,
            10799597-10799724,10799843-10800043,10800158-10800227,
            10801233-10801314,10801433-10801556,10801761-10801778
          Length = 1960

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = +3

Query: 186  EIENDKIYKLVETVDSSNKLSRRQVDFL-IHALLNNVSVTFTLHRFVDDNVLTQDELSFL 362
            ++  DK   +VE++DSS ++ + Q D L +  LL N      L   VDD   T+DE+  L
Sbjct: 1404 QVGTDKSRDIVESIDSSERVLKYQDDILQLKVLLTN------LEEQVDDLRSTKDEVEIL 1457

Query: 363  ANFLVTKLDE 392
               L +KL+E
Sbjct: 1458 NMVLKSKLEE 1467


>06_01_0614 +
           4448129-4448157,4448733-4449231,4449512-4449550,
           4449590-4449802,4449941-4450227,4450456-4450567,
           4451515-4451751,4451857-4451957,4452285-4452384,
           4452509-4453141
          Length = 749

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 385 WTKHTNCRRINSKINKNENKFVQYTISVFN*FIKFTSD 498
           WTK  + R+IN + N+  ++    T S F     +T D
Sbjct: 484 WTKEVDTRKINRRGNEKNDRIGTCTFSFFPFLASYTLD 521


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,932,794
Number of Sequences: 37544
Number of extensions: 238929
Number of successful extensions: 621
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)