Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29j07
         (648 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X82641-1|CAA57963.1|  643|Drosophila melanogaster alpha 1,2 mann...    34   0.19 
AE014298-1434|AAF46571.3|  643|Drosophila melanogaster CG32684-P...    34   0.19 
AY180917-1|AAN87269.1| 2360|Drosophila melanogaster ORF protein.       30   2.4  
AY122110-1|AAM52622.1|  590|Drosophila melanogaster GH12419p pro...    29   4.1  
AE014298-3087|AAZ52506.1|  590|Drosophila melanogaster CG11566-P...    29   4.1  
AF220353-1|AAF32355.1| 2244|Drosophila melanogaster kinesin-like...    28   9.5  
AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA...    28   9.5  

>X82641-1|CAA57963.1|  643|Drosophila melanogaster alpha 1,2
           mannosidase protein.
          Length = 643

 Score = 33.9 bits (74), Expect = 0.19
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = +2

Query: 452 NIQFQSLINLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDD 616
           NI   ++I L    A+  +S N N+IK +L    N P+NV L+LN+   +  DD+
Sbjct: 34  NINLSNIIRLNEKVASDSVSNNENQIK-ELNYVNNHPRNVYLKLNASSRDDEDDE 87


>AE014298-1434|AAF46571.3|  643|Drosophila melanogaster CG32684-PB,
           isoform B protein.
          Length = 643

 Score = 33.9 bits (74), Expect = 0.19
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = +2

Query: 452 NIQFQSLINLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDD 616
           NI   ++I L    A+  +S N N+IK +L    N P+NV L+LN+   +  DD+
Sbjct: 34  NINLSNIIRLNEKVASDSVSNNENQIK-ELNYVNNHPRNVYLKLNASSRDDEDDE 87


>AY180917-1|AAN87269.1| 2360|Drosophila melanogaster ORF protein.
          Length = 2360

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = +3

Query: 108  WLCE--QVYPDKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSR 251
            WL +  +++P +  S++   +IN  LND+I+ D IY+L+E   S  KL R
Sbjct: 1235 WLADPKELWPRQQ-SVEEPVLINTVLNDKID-DPIYELIERYSSIEKLIR 1282


>AY122110-1|AAM52622.1|  590|Drosophila melanogaster GH12419p
           protein.
          Length = 590

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 431 KMKINLCNIQFQSLINLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEE 601
           K  ++ CN+  +S    LN +  T  S++S  + A L+P   DP         +P+E
Sbjct: 168 KPAVSKCNLHSRSFAKSLN-ELCTDTSVSSTHVPAPLLPSAADPLPAPALFADLPQE 223


>AE014298-3087|AAZ52506.1|  590|Drosophila melanogaster CG11566-PA
           protein.
          Length = 590

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 431 KMKINLCNIQFQSLINLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEE 601
           K  ++ CN+  +S    LN +  T  S++S  + A L+P   DP         +P+E
Sbjct: 168 KPAVSKCNLHSRSFAKSLN-ELCTDTSVSSTHVPAPLLPSAADPLPAPALFADLPQE 223


>AF220353-1|AAF32355.1| 2244|Drosophila melanogaster kinesin-like
           kinetochore motorprotein CENP-meta protein.
          Length = 2244

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +3

Query: 186 EIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDEL 353
           E+EN     L    ++  K S+ +VD L+ ALL   S   +L + +D+  LT+D L
Sbjct: 599 EVENQVAVGLEFEFEAHKKSSKLRVDDLLSALLEKESTIESLQKSLDN--LTRDVL 652


>AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA
           protein.
          Length = 2013

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +3

Query: 186 EIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDEL 353
           E+EN     L    ++  K S+ +VD L+ ALL   S   +L + +D+  LT+D L
Sbjct: 599 EVENQVAVGLEFEFEAHKKSSKLRVDDLLSALLEKESTIESLQKSLDN--LTRDVL 652


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,244,860
Number of Sequences: 53049
Number of extensions: 440887
Number of successful extensions: 1302
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)