Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29j07
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-19|CAA22104.1|  696|Caenorhabditis elegans Hypothetical...    29   3.8  
AC006610-3|AAK85449.1|  264|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z82051-4|CAB04818.2|  339|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AC084197-23|AAM44389.1|  610|Caenorhabditis elegans Hypothetical...    28   6.6  
Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AL033514-19|CAA22104.1|  696|Caenorhabditis elegans Hypothetical
           protein Y75B8A.19 protein.
          Length = 696

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 162 VINMFLNDEIENDKIYKL 215
           V+ +FLNDE+ NDK+Y L
Sbjct: 206 VVEIFLNDELLNDKLYIL 223


>AC006610-3|AAK85449.1|  264|Caenorhabditis elegans Hypothetical
           protein C30F12.3 protein.
          Length = 264

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 174 FLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVT 302
           F  D+  N+KIYK V TV     L+R ++     AL +  S T
Sbjct: 207 FFRDKRNNEKIYKEVVTVKKIQLLTRMRISLSAEALGSESSHT 249


>Z82051-4|CAB04818.2|  339|Caenorhabditis elegans Hypothetical
           protein T23D5.7 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 480 KLIKD*NCILHKFIFIFIYLTINTPAIGMLRPVL 379
           K++ D    LHK IF  + L I TP I +  P++
Sbjct: 236 KMVSDQERKLHKQIFKTLMLQITTPTIVLFSPII 269


>AC084197-23|AAM44389.1|  610|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.33 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 545 PDENDPKNVTLRLNSVPEECTDDD 616
           PD N   N  +RL  VP  C +DD
Sbjct: 149 PDSNGEVNHVIRLRGVPWSCKEDD 172


>Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical
           protein C33D3.3 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 216 LVCRFCHFQFHRLKT 172
           LVCR CH  FH  KT
Sbjct: 162 LVCRNCHLYFHHYKT 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,928,467
Number of Sequences: 27780
Number of extensions: 243580
Number of successful extensions: 677
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)