Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29j04
         (253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...    24   3.5  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    24   3.5  
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...    24   3.5  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    23   4.7  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    23   6.2  
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    23   8.2  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 221 NWKGLRATSKLSI 183
           +WKGLR T KL+I
Sbjct: 52  DWKGLRVTVKLTI 64


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = +1

Query: 109 SIIKINNSLKKLTKFAFIENPFFFMIESLLVARRPFQFHQDR 234
           S ++  N +  L  F    +PF   I+    A +PF+   ++
Sbjct: 503 SFVEFTNDISNLQNFLSNSDPFKRSIQETFEAPKPFEVEMNQ 544


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 221 NWKGLRATSKLSI 183
           +WKGLR T KL+I
Sbjct: 52  DWKGLRVTVKLTI 64


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 132 TIIYFNNTCCLSARQSGICLFSTYL 58
           T+I FN+  CL  R+S   + ST L
Sbjct: 479 TLILFNDRICLVQRRSKSSIASTIL 503


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 347

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 44 YYMNSVFIKKLIPH 3
          YY NSVF+ K+ P+
Sbjct: 50 YYTNSVFVWKIYPN 63


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 195 TGGPKAFPVSPGQVG 239
           TG P + PV PG +G
Sbjct: 125 TGSPISIPVGPGTLG 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 976,646
Number of Sequences: 5004
Number of extensions: 14616
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)