Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29j04
         (253 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1167 + 31432731-31433769,31433893-31433941,31434363-314344...    27   1.6  
09_04_0660 - 19286653-19287271,19287791-19287916,19288016-192882...    25   8.4  

>04_04_1167 +
           31432731-31433769,31433893-31433941,31434363-31434427,
           31435237-31435346,31436327-31436388,31438067-31438113,
           31438148-31438272,31438651-31438764,31438852-31438979,
           31439059-31439154,31439565-31439706,31439799-31439893,
           31439966-31440095,31440179-31440323,31440430-31440656
          Length = 857

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 114 NTCCLSARQSGICLFSTYLSSNTLLYE 34
           +TCC +    G+C F  +  + +LLYE
Sbjct: 176 DTCCFNILVKGLCQFGKFGDAISLLYE 202


>09_04_0660 -
           19286653-19287271,19287791-19287916,19288016-19288221,
           19288417-19288549,19288632-19288713,19288906-19289035,
           19289187-19289279,19289391-19289510,19289594-19289660,
           19290079-19290137,19290719-19290943
          Length = 619

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 244 CSPTCPGETGKAFGPPV 194
           C+ TCPG +G   GP +
Sbjct: 95  CASTCPGPSGSDSGPVI 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,834,501
Number of Sequences: 37544
Number of extensions: 78631
Number of successful extensions: 124
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)