Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29j04
         (253 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic acetylch...    23   2.3  
AJ271117-1|CAB88872.1|  355|Anopheles gambiae serine protease pr...    23   2.3  
DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein O-fucosylt...    22   4.0  
AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform ...    21   5.2  
AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform ...    21   5.2  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    21   5.2  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    21   9.1  

>AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 9 protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 129 IIYFNNTCCLSARQSGICLFSTYLS 55
           +I+F+NT  L+A  + IC+    LS
Sbjct: 307 VIFFSNTLLLTAFSTIICVIVMNLS 331


>AJ271117-1|CAB88872.1|  355|Anopheles gambiae serine protease
           protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 108 CCLSARQSGICLFSTYLSSNTLLYEFRF 25
           C   ARQSG C+     +S   +Y  RF
Sbjct: 26  CVNPARQSGKCVLVRECASLLAIYSKRF 53


>DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein
           O-fucosyltransferase 1 protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 192 FTGGPKAFPV 221
           FTG P AFPV
Sbjct: 187 FTGAPAAFPV 196


>AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform B
           protein.
          Length = 755

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = +3

Query: 90  VWQKGSKYY 116
           +WQ+G++YY
Sbjct: 247 IWQRGTQYY 255


>AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform A
           protein.
          Length = 753

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = +3

Query: 90  VWQKGSKYY 116
           +WQ+G++YY
Sbjct: 247 IWQRGTQYY 255


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 201 GPKAFPVSPGQVG 239
           GP+ FP  PG+ G
Sbjct: 247 GPRGFPGRPGEKG 259


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 201 GPKAFPVSPGQVGEQ 245
           G K F   PG++GE+
Sbjct: 421 GEKGFKGEPGRIGER 435


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,140
Number of Sequences: 2352
Number of extensions: 3560
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 53
effective length of database: 439,323
effective search space used: 13179690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)