Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29j04
         (253 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   0.45 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   0.45 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   1.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   1.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   4.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   7.3  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               19   9.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    19   9.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 0.45
 Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 157 FIENPFFFMIESLLVARRP-FQFHQDRWAS 243
           +++  F  ++  LLV RRP ++F  +R++S
Sbjct: 344 WVKRVFIHILPRLLVMRRPQYKFETNRYSS 373


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 0.45
 Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 157 FIENPFFFMIESLLVARRP-FQFHQDRWAS 243
           +++  F  ++  LLV RRP ++F  +R++S
Sbjct: 344 WVKRVFIHILPRLLVMRRPQYKFETNRYSS 373


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 121 INNSLKKLTKFAFIENPFFFMIESLLVARRPFQFH 225
           INN L  L +    + PF   I    +  +PF FH
Sbjct: 470 INNGLL-LEEQRNDDKPFLIKIRQYRLNHKPFNFH 503


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 121 INNSLKKLTKFAFIENPFFFMIESLLVARRPFQFH 225
           INN L  L +    + PF   I    +  +PF FH
Sbjct: 470 INNGLL-LEEQRNDDKPFLIKIRQYRLNHKPFNFH 503


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 150 FC*FF*TIIYFNNTCCLSARQSGICLFSTYLSSN 49
           F   F TII F      +   SG C FS+ LS +
Sbjct: 284 FAFIFATIIQFAVVHYFTKYGSGECYFSSDLSES 317



 Score = 19.8 bits (39), Expect = 5.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 91  SGRKAASIIKINNSLKKLTKFAFIENPFFFM 183
           SGR+        NS+ K+ + + I  P FF+
Sbjct: 406 SGRRRRRRTPRYNSVSKIDRASRIVFPLFFL 436


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 109 SIIKINNSLKKLTKFAFIENPFFFMI 186
           S+I +N+ +  +     + NP  FMI
Sbjct: 11  SLIILNDEIYNIIASPQLNNPTLFMI 36


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +3

Query: 24  ENGIHIIVCLN 56
           ENG++ I+C +
Sbjct: 129 ENGLNFIICFS 139


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 221 NWKGLRA 201
           NW+GLRA
Sbjct: 630 NWEGLRA 636


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,565
Number of Sequences: 438
Number of extensions: 953
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4527252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)