Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29j03
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609...    37   0.016
06_03_0020 + 15515768-15517696                                         33   0.20 
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828...    32   0.35 
05_07_0140 - 27982037-27983794                                         30   1.9  
08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271           28   5.8  
05_01_0502 + 4191443-4191769,4191770-4191892,4194161-4194313,419...    28   5.8  
04_03_0212 + 12697854-12698549,12698655-12698930,12698991-126990...    28   7.6  

>03_02_0168 +
           6094658-6096220,6096335-6096608,6096671-6096821,
           6097052-6097262,6097344-6097550,6097982-6098350
          Length = 924

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 23/78 (29%), Positives = 40/78 (51%)
 Frame = +1

Query: 232 KNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVLWKY 411
           K++F+ C+Q+ FCKR R   P      L+LD+     ++  A   ++ A+    + L   
Sbjct: 31  KDEFRNCNQTPFCKRARTRAPHSLDAPLSLDA----ASLAVATDGSLTASLSHPSRLRPL 86

Query: 412 AFKLSALADGTFRVELDE 465
             +LSAL     R+++DE
Sbjct: 87  LLRLSALPPHALRLQIDE 104


>06_03_0020 + 15515768-15517696
          Length = 642

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 27/78 (34%), Positives = 38/78 (48%)
 Frame = +1

Query: 340 GNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTFRVELDEADPLYPRYRTQLALDGEP 519
           G     E V  D A E++  L KY  +  A+A GT      E  P+  R    L + G+ 
Sbjct: 550 GYTPQTEFVLQDLATEQKEDLLKYHSEKLAIAFGTMNAM--EGKPI--RIMKNLRICGDC 605

Query: 520 KADGLKLISKDDGKVILV 573
            A   KL+SK +GKVI++
Sbjct: 606 HAFA-KLVSKSEGKVIII 622


>01_06_0905 +
           32880368-32880633,32882439-32882568,32882704-32882894,
           32883625-32883852,32884062-32884224,32884343-32884416,
           32884484-32884601,32884722-32884788,32885152-32885223,
           32885350-32885513
          Length = 490

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +1

Query: 283 PFKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTF 447
           P  P +  Y+LNL+SI+V+G  L  +      ++ + T++      L+ LADG +
Sbjct: 267 PLVPSQPHYNLNLESIVVNGQKLPIDSSLFTTSNTQGTIV-DSGTTLAYLADGAY 320


>05_07_0140 - 27982037-27983794
          Length = 585

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = -1

Query: 542 ISFNPSAFGSPSNASCVLYLGYRGSASSSSTRNVPSASADNLKAYFHKTVRFSSAASMVT 363
           ++FNP  +G P  A     LG  G A+++S    P + +D L      T   +  A++  
Sbjct: 8   VAFNPEGWGPPDTAPAPASLG--GGAAAASIPFAPFSRSDKLGRIADWTRNPAGPAALAA 65

Query: 362 TSADRTLP*TKI 327
            S D     T +
Sbjct: 66  ASRDSVFDFTSV 77


>08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271
          Length = 450

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/23 (39%), Positives = 20/23 (86%)
 Frame = +1

Query: 541 ISKDDGKVILVNTQGHKVIITSE 609
           +S DD +++L++++G KV++TS+
Sbjct: 351 MSIDDERIVLLDSRGEKVVVTSD 373


>05_01_0502 +
           4191443-4191769,4191770-4191892,4194161-4194313,
           4194420-4194505,4194648-4194732,4194871-4194990,
           4195066-4195134,4195351-4195506
          Length = 372

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = +1

Query: 286 FKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTFRVELDE 465
           F P+   + L LD      N+  A++V I      ++V + Y       A G+F + L  
Sbjct: 77  FFPQFVNFLLLLDMFFFVSNLFMADLVGIHGLQVLKSVPFPYTITTFQFASGSFFITLMW 136

Query: 466 ADPLYPRYRTQL 501
              L+P+ R  L
Sbjct: 137 LLNLHPKPRLSL 148


>04_03_0212 +
           12697854-12698549,12698655-12698930,12698991-12699038,
           12699659-12699715,12700965-12701163,12702267-12702373,
           12702586-12702759,12702844-12703083,12703638-12703693,
           12704499-12704622
          Length = 658

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -3

Query: 318 IQTILRFFWFERAEPFTKAGLTACFKFIFVYRRN 217
           IQTI   F  E A    KA   +CF   F  +RN
Sbjct: 323 IQTIFTHFMLENANHMRKAATRSCFYAGFAVQRN 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,668,140
Number of Sequences: 37544
Number of extensions: 423798
Number of successful extensions: 1222
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)