Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29j03
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026208-3|AAB71267.3|  903|Caenorhabditis elegans Hypothetical ...    70   1e-12
Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical pr...    57   1e-08
Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical pr...    47   1e-05
U58746-6|AAB00626.2|  378|Caenorhabditis elegans Hypothetical pr...    32   0.42 
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    31   0.73 
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    31   0.73 
Z68342-2|CAA92772.2|  424|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    29   3.9  
U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AL032646-4|CAA21678.1|  237|Caenorhabditis elegans Hypothetical ...    29   3.9  
AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical ...    29   3.9  
U97012-9|AAK39142.2|  995|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    28   6.8  
Z81109-12|CAE17917.2|  364|Caenorhabditis elegans Hypothetical p...    27   9.0  
U58742-1|AAB36857.2|  170|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AF026208-3|AAB71267.3|  903|Caenorhabditis elegans Hypothetical
           protein F52D1.1 protein.
          Length = 903

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 51/149 (34%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
 Frame = +1

Query: 190 LVAAFVIIG-ISAVDKNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSAEVV 366
           LV A+++IG + AVD+  FKTC QSGFCKR R      + Y +  DS+  +   L A + 
Sbjct: 4   LVVAWLLIGALDAVDRQNFKTCEQSGFCKRHRAV-TSPTGYEVVGDSVKTNETGLHALI- 61

Query: 367 TIDAADEKRTVLWKYAFKLSALADGTFRVELDEAD-PLYPRYRTQLAL-DGEPKADGLKL 540
                  K T L      + AL D T RV +DE D  L  RY+   AL D EP    +K 
Sbjct: 62  -----KNKDTTL---RLSIVALKDSTVRVVIDENDGALRKRYQPLEALVDREPAQQKVKK 113

Query: 541 ISKDDGKVILVNTQGHKVIITSEPLKLEF 627
           I ++     ++ T G+++++  +P +++F
Sbjct: 114 IKEEATATKVLTTDGNRIVLQHKPFRIDF 142


>Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical
           protein F40F9.6b protein.
          Length = 910

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 2/163 (1%)
 Frame = +1

Query: 178 WALVLVAAFVIIGISAVDKNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSA 357
           W + ++     + +  V ++ FKTC QS FCK+ R    E + Y L  DSI  HG V +A
Sbjct: 7   WIVPIILLATPLAVQMVKRDDFKTCEQSAFCKQHRAI-TEPTGYELLADSITHHGAVWTA 65

Query: 358 EVVTIDAADEKRTVLWKYAFKLSALADGTFRVELDEAD-PLYPRYRTQLALDGEPKADGL 534
            V      + + T+       +  LAD T RV++DE +  +  RY    AL   P+    
Sbjct: 66  NV-----RNSQNTL----KINVIGLADSTVRVQIDEPESAIRKRYVPNPALVSLPEELEF 116

Query: 535 KLISKDDGKV-ILVNTQGHKVIITSEPLKLEFLDXNGEVAVVL 660
             +   D +  I+   +  KV++T +P  +   +   E+   L
Sbjct: 117 SSVENGDQEAKIIGGNKKLKVVVTYKPFLVSIFNEFDELVAQL 159


>Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical
           protein F40F9.6a protein.
          Length = 924

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 15/176 (8%)
 Frame = +1

Query: 178 WALVLVAAFVIIGISAVDKNKFKTCSQSGFCKRLRPFK-------------PEKSQYSLN 318
           W + ++     + +  V ++ FKTC QS FCK+ R                 E + Y L 
Sbjct: 7   WIVPIILLATPLAVQMVKRDDFKTCEQSAFCKQHRAITVRRGSQNHHNWSLQEPTGYELL 66

Query: 319 LDSILVHGNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTFRVELDEAD-PLYPRYRT 495
            DSI  HG V +A V      + + T+       +  LAD T RV++DE +  +  RY  
Sbjct: 67  ADSITHHGAVWTANV-----RNSQNTL----KINVIGLADSTVRVQIDEPESAIRKRYVP 117

Query: 496 QLALDGEPKADGLKLISKDDGKV-ILVNTQGHKVIITSEPLKLEFLDXNGEVAVVL 660
             AL   P+      +   D +  I+   +  KV++T +P  +   +   E+   L
Sbjct: 118 NPALVSLPEELEFSSVENGDQEAKIIGGNKKLKVVVTYKPFLVSIFNEFDELVAQL 173


>U58746-6|AAB00626.2|  378|Caenorhabditis elegans Hypothetical
           protein R05G6.9 protein.
          Length = 378

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 20/71 (28%), Positives = 28/71 (39%)
 Frame = -1

Query: 632 SKNSSFKGSDVMMTLCPCVLTRITFPSSFEISFNPSAFGSPSNASCVLYLGYRGSASSSS 453
           +KNS      +  T   C  T +    S + S N    G+  + +C  YLGY G      
Sbjct: 192 TKNSFSCACQIGYTGSRCEKTPVALCDSRDCSSNGLCIGTKDSMTCACYLGYSGDKCEKI 251

Query: 452 TRNVPSASADN 420
           T  +  AS  N
Sbjct: 252 TGTMCEASDCN 262


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 26/105 (24%), Positives = 48/105 (45%)
 Frame = -1

Query: 656 TTATSPXWSKNSSFKGSDVMMTLCPCVLTRITFPSSFEISFNPSAFGSPSNASCVLYLGY 477
           TT T+P  ++++S   S  + T      T  T PSS   + + +A  S S+ +       
Sbjct: 470 TTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSST 529

Query: 476 RGSASSSSTRNVPSASADNLKAYFHKTVRFSSAASMVTTSADRTL 342
               SS++T++  + S+D     F+  V  ++     +TS + TL
Sbjct: 530 STQQSSTTTKSETTTSSDGTNPDFY-FVEKATTTFYDSTSVNLTL 573


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 26/105 (24%), Positives = 48/105 (45%)
 Frame = -1

Query: 656 TTATSPXWSKNSSFKGSDVMMTLCPCVLTRITFPSSFEISFNPSAFGSPSNASCVLYLGY 477
           TT T+P  ++++S   S  + T      T  T PSS   + + +A  S S+ +       
Sbjct: 470 TTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSST 529

Query: 476 RGSASSSSTRNVPSASADNLKAYFHKTVRFSSAASMVTTSADRTL 342
               SS++T++  + S+D     F+  V  ++     +TS + TL
Sbjct: 530 STQQSSTTTKSETTTSSDGTNPDFY-FVEKATTTFYDSTSVNLTL 573


>Z68342-2|CAA92772.2|  424|Caenorhabditis elegans Hypothetical
           protein F38E11.3 protein.
          Length = 424

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 447 PCGAR*SGSSIPKIQDAAGVGWGTE-GRRIKTDFERRWKSYSRQ 575
           PC     G  IP+I ++  + +GT+   RI    E RW  +S+Q
Sbjct: 293 PCTEGYLGDGIPRINESLKISFGTDCNNRICFLEEMRWACFSQQ 336


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/54 (33%), Positives = 33/54 (61%)
 Frame = -1

Query: 479 YRGSASSSSTRNVPSASADNLKAYFHKTVRFSSAASMVTTSADRTLP*TKILSK 318
           +R +ASSSS+ +  SASA++   +    VR  SA+S + ++  R +P + I+ +
Sbjct: 221 HRPAASSSSSSSSSSASAEHHPTH---QVRVPSASSSIESNEQRVVPESVIVKE 271


>U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical protein
            T14E8.1c protein.
          Length = 1018

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 370  W*PPQRIERCREPKYCPNSNYTEIFL 293
            W       R R+P YCP   YT++ L
Sbjct: 948  WLKESETNRLRKPPYCPEKLYTDVML 973


>U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical protein
            T14E8.1b protein.
          Length = 1030

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 370  W*PPQRIERCREPKYCPNSNYTEIFL 293
            W       R R+P YCP   YT++ L
Sbjct: 948  WLKESETNRLRKPPYCPEKLYTDVML 973


>U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical protein
            T14E8.1a protein.
          Length = 1086

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 370  W*PPQRIERCREPKYCPNSNYTEIFL 293
            W       R R+P YCP   YT++ L
Sbjct: 948  WLKESETNRLRKPPYCPEKLYTDVML 973


>AL032646-4|CAA21678.1|  237|Caenorhabditis elegans Hypothetical
           protein Y54E2A.5 protein.
          Length = 237

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 184 LVLVAAFVIIGISAVDKNKFKTCSQSGFCK-RLRPFK 291
           LVL   FV +  SA D +    C  + FC+   RPFK
Sbjct: 3   LVLAVIFVFLTFSAADVDGDVQCGNNKFCRVGFRPFK 39


>AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical
           protein Y51A2D.12 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = -3

Query: 390 LFIRSVNGNHLSG*NVAVNQNTVQIQTILRFFWFERAEPFTKAGLTACFKFIFVYRRNAD 211
           LF+ S+  ++    N+A+  ++  ++ +LR  W     PF    LT    F+ +Y     
Sbjct: 234 LFLTSLTVSNYYLTNLAIGSDSDFVKFLLR--WIPLLTPFASDALTLTHPFLLLYFSKTV 291

Query: 210 NHKCRDQD 187
             KC + +
Sbjct: 292 RRKCAESN 299


>U97012-9|AAK39142.2|  995|Caenorhabditis elegans Hypothetical
           protein C04E6.11 protein.
          Length = 995

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -1

Query: 404 HKTVRFSSAASMVTTSADRTLP*TKILSKFKLY*DFSGL---KGRSLLQKPD 258
           H+  RFSS  S ++ SA  T P  +I SK     DF G+   K ++    PD
Sbjct: 16  HRISRFSSKISQLSISAATTFPSIEIDSKLVRRGDFRGVVASKEKNRASNPD 67


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore complex
            protein protein7 protein.
          Length = 1217

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 539  SFNPSAFGSPSNASCVLYLGYRGSASSSSTRNVPSASA 426
            S NP  FG PS++S   +     +++SSST   PS++A
Sbjct: 1044 STNPPMFGGPSSSSIPAF----STSNSSSTSGFPSSTA 1077


>Z81109-12|CAE17917.2|  364|Caenorhabditis elegans Hypothetical
           protein R10D12.17 protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +1

Query: 109 YLKGILLSVYDDIR*Q*KPKMKVWALVLVAAFVIIGISAVDKNKFKTCSQSGF 267
           Y+  I+ S  D++      ++ +W  VL A   +I +  ++ N+F+  S  GF
Sbjct: 86  YISRIVFSTGDNMS-----RLSIWLCVLFALVRVIVLQKINDNRFQILSAPGF 133


>U58742-1|AAB36857.2|  170|Caenorhabditis elegans Hypothetical
           protein F31A3.3 protein.
          Length = 170

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 553 RLSKSVLIRLPSVPHPTPAASCILGIEDPL 464
           +  + V++  PS P PTP+AS  +GI+ P+
Sbjct: 52  KFKEVVVVEQPSPPKPTPSAS-TMGIDIPM 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,012,630
Number of Sequences: 27780
Number of extensions: 363809
Number of successful extensions: 886
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)