Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29j01
         (311 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MG43 Cluster: NADH-ubiquinone oxidoreductase chain 5;...    33   0.94 
UniRef50_Q7RRE3 Cluster: Putative uncharacterized protein PY0078...    32   2.2  
UniRef50_Q22BG3 Cluster: Putative uncharacterized protein; n=2; ...    30   8.7  

>UniRef50_A0MG43 Cluster: NADH-ubiquinone oxidoreductase chain 5;
           n=1; Nymphon gracile|Rep: NADH-ubiquinone oxidoreductase
           chain 5 - Nymphon gracile
          Length = 558

 Score = 33.5 bits (73), Expect = 0.94
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 311 FFFCFSYLIFLYTYFIPVIGFFA*ANHLLCRFFLI 207
           FF CFS   F ++ F+  + +    N+L C FFL+
Sbjct: 58  FFLCFSKFYFFHSVFLFSVVYMGGVNYLFCFFFLL 92


>UniRef50_Q7RRE3 Cluster: Putative uncharacterized protein PY00788;
            n=9; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
            protein PY00788 - Plasmodium yoelii yoelii
          Length = 2485

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +1

Query: 34   LQGCFQYY-CAQNKANINKLSVQNKHIQGLKIV----NIKSAKINQSN 162
            L+  F YY C+ NK N      Q K IQ +KI+    N+K  ++N+ N
Sbjct: 2026 LEETFNYYSCSNNKKNNKMKDFQIKKIQEIKIIENLDNLKKIELNEDN 2073


>UniRef50_Q22BG3 Cluster: Putative uncharacterized protein; n=2;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 750

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 43  CFQYYCAQNKANINKLSVQNKHIQGLKIVNIKSAKINQ 156
           CFQYY +  + NI  + +  K +Q       K A I Q
Sbjct: 229 CFQYYISDKQINIQNIFIDVKQLQSFPETQFKFANICQ 266


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,149,036
Number of Sequences: 1657284
Number of extensions: 2627110
Number of successful extensions: 8242
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8234
length of database: 575,637,011
effective HSP length: 80
effective length of database: 443,054,291
effective search space used: 10190248693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)