Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29j01
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   1.5  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   2.0  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   2.6  
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    25   2.6  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    24   6.1  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    24   6.1  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    23   8.1  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 31  WLQGCFQYYCAQNKANINKLSVQNKHIQGLKIVNIKSAKINQSN 162
           WL  CF+   A   A+ N++     +IQ LK+ +    +I  SN
Sbjct: 605 WLIKCFEDMIANESASKNEIMKLVPNIQALKLESSVPLEIRCSN 648


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 121 LSLVCAYFARSVCLCWLYFAR 59
           LS +C      +C CW YF R
Sbjct: 146 LSYICFSSLIRICHCWTYFIR 166


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -2

Query: 109 CAYFARSVCLCWLYFARNSTENNPEASCREL 17
           C YF +  CLC  +   N         C EL
Sbjct: 671 CPYFVKKRCLCGKHILENQPCYRENVRCGEL 701


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 103 YFARSVCLCWLYF 65
           ++   +C+CWLYF
Sbjct: 63  FYGTLLCICWLYF 75


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 290 LIFLYTYFIPVIGFFA*ANHLL 225
           L  LYT  IP+I F++  +HLL
Sbjct: 285 LKLLYTSVIPLIYFYSILSHLL 306


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 1010

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 31 WLQGCFQYYCAQNKANINK 87
          W  GC  +YC + +   NK
Sbjct: 32 WASGCLLWYCLETRTFENK 50


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 100 FARSVCLCWLYFARNSTENNPEASCRE 20
           F  S+  C+ +F+R+     P   C E
Sbjct: 405 FISSILACFTFFSRDKVHVEPIEDCNE 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 891,158
Number of Sequences: 5004
Number of extensions: 12404
Number of successful extensions: 39
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)