Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29j01
         (311 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094726-1|AAM11079.1|  428|Drosophila melanogaster GH23040p pro...    26   8.5  
AE014297-68|AAF52139.2|  473|Drosophila melanogaster CG1090-PA, ...    26   8.5  
AE014297-67|AAN13306.3|  642|Drosophila melanogaster CG1090-PB, ...    26   8.5  

>AY094726-1|AAM11079.1|  428|Drosophila melanogaster GH23040p
           protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 311 FFFCFSYLIFLYTYFIPVIGFFA*ANHLLC 222
           FF+C S L+ L   F  VI  F     LLC
Sbjct: 64  FFYCVSILVMLIIIFNDVISCFESVVMLLC 93


>AE014297-68|AAF52139.2|  473|Drosophila melanogaster CG1090-PA,
           isoform A protein.
          Length = 473

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 311 FFFCFSYLIFLYTYFIPVIGFFA*ANHLLC 222
           FF+C S L+ L   F  VI  F     LLC
Sbjct: 64  FFYCVSILVMLIIIFNDVISCFESVVMLLC 93


>AE014297-67|AAN13306.3|  642|Drosophila melanogaster CG1090-PB,
           isoform B protein.
          Length = 642

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 311 FFFCFSYLIFLYTYFIPVIGFFA*ANHLLC 222
           FF+C S L+ L   F  VI  F     LLC
Sbjct: 233 FFYCVSILVMLIIIFNDVISCFESVVMLLC 262


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,108,992
Number of Sequences: 53049
Number of extensions: 120206
Number of successful extensions: 324
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 610819518
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)