Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29i23
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...   103   2e-23
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    27   2.8  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    25   6.5  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score =  103 bits (247), Expect = 2e-23
 Identities = 61/145 (42%), Positives = 84/145 (57%), Gaps = 1/145 (0%)
 Frame = +1

Query: 151 RLQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAVVTSSQAL 330
           RL  LR LM  +   L  Y++P+ DAH+SEY   ADARR +IS F GSAG AV+  + A 
Sbjct: 8   RLNKLRELMKERGYTL--YVVPSEDAHSSEYTCDADARRAFISGFDGSAGCAVIGETSAA 65

Query: 331 VWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVDPQTMTRDEWT 510
           ++TDGRY+ Q  +++D   WTLMKQ     PT E++     K  + VG+D   +T     
Sbjct: 66  LFTDGRYFNQASQQLD-ENWTLMKQGFTGVPTWEEYCTQMTKCNEKVGIDSSLITFPAAK 124

Query: 511 PIQTAL-KKISAQLVPISNNLVDDV 582
            ++ +L  K  A LV   +NLVD V
Sbjct: 125 ALRESLFLKSGAVLVGDHDNLVDIV 149


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 304 AVVTSSQALVWTDGRYYTQFEREVDL 381
           AV T +  ++WT G Y+   ++E+++
Sbjct: 317 AVSTENSVMLWTTGNYHWYLKKEINI 342


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +1

Query: 265 REWISAFTGSAGTAVVTSSQALVWTD 342
           R W++++ G  G     S + L+W +
Sbjct: 43  RSWMTSYVGFNGETAAISEEQLIWAE 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,999
Number of Sequences: 5004
Number of extensions: 50406
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)