Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29i23
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1033 - 27035977-27036144,27036420-27036544,27036695-270367... 125 2e-29
07_01_0747 - 5724586-5724648,5725229-5725309,5725564-5725656,572... 118 5e-27
11_05_0100 - 19056465-19056470,19057043-19057276,19058391-190585... 73 2e-13
11_05_0099 - 19044772-19044837,19044896-19045051,19045529-190456... 72 4e-13
04_04_1310 - 32517074-32517193,32517295-32517360,32517468-325175... 28 5.0
01_06_0546 + 30124693-30124970,30125711-30125861,30125955-301261... 28 5.0
10_08_0980 - 22002818-22003008,22003646-22003750,22003859-220039... 28 6.7
06_03_1041 - 27086661-27086981,27087089-27087295,27087398-270876... 28 6.7
>06_03_1033 -
27035977-27036144,27036420-27036544,27036695-27036766,
27036872-27036976,27037513-27037567,27038196-27038276,
27039109-27039159,27039531-27039594,27040783-27040850,
27040993-27041079,27041401-27041655,27041768-27041890,
27042013-27042297,27042948-27043087,27043696-27043759,
27043929-27044048
Length = 620
Score = 125 bits (302), Expect = 2e-29
Identities = 59/143 (41%), Positives = 93/143 (65%)
Frame = +1
Query: 154 LQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAVVTSSQALV 333
L LRALM++ P L A ++P+ DAH SEY+ D RR+++S FTGSAG A++T +AL+
Sbjct: 14 LDELRALMAAHSPSLHALVVPSEDAHQSEYVSERDKRRQFVSGFTGSAGLALITMKEALL 73
Query: 334 WTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVDPQTMTRDEWTP 513
WTDGRY+ Q E+++ + W LM+ + + P +E W+A NL D V+G++P ++ D
Sbjct: 74 WTDGRYFLQAEQQL-TNRWKLMR--MGEDPPVEVWIADNLSDEAVIGINPWCISVDTAQR 130
Query: 514 IQTALKKISAQLVPISNNLVDDV 582
+ A K L +S++LVD++
Sbjct: 131 YEHAFSKKHQTLFQLSSDLVDEI 153
>07_01_0747 -
5724586-5724648,5725229-5725309,5725564-5725656,
5725775-5725929,5726023-5726131,5726291-5726481,
5727463-5727614,5728453-5728728,5729415-5729587,
5730023-5730298,5730839-5730958,5731051-5731176,
5731629-5731970
Length = 718
Score = 118 bits (283), Expect = 5e-27
Identities = 60/146 (41%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
Frame = +1
Query: 148 QRLQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAVVTSSQA 327
++L++LR L++ + AYI+P+ DAH SE+I RR +++ FTGSAGTAVVT +A
Sbjct: 86 EKLRSLRRLLARPDVAIDAYIVPSQDAHQSEFIAECFMRRAYLTGFTGSAGTAVVTKDKA 145
Query: 328 LVWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVDPQTMTRDEW 507
+WTDGRY+ Q E+E+ WTLM+ PT +WL L G VG+DP + D
Sbjct: 146 ALWTDGRYFLQAEKELS-HDWTLMRSGNQGVPTTSEWLNEVLPSGCRVGIDPFLFSFDAA 204
Query: 508 TPIQTALKKISAQLVPISN-NLVDDV 582
++ A+ + + +LV I + NLVD++
Sbjct: 205 EELKDAISEKNHELVLIKDLNLVDEI 230
>11_05_0100 -
19056465-19056470,19057043-19057276,19058391-19058546,
19059639-19059763,19059912-19059983,19060080-19060184,
19060691-19060745,19061576-19061656,19062806-19062869,
19064715-19064782,19064947-19065033,19066121-19066285,
19066310-19066429,19066485-19066607,19066738-19067019,
19067936-19068075,19068234-19068335,19068802-19068874,
19069061-19069171
Length = 722
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/102 (36%), Positives = 60/102 (58%)
Frame = +1
Query: 277 SAFTGSAGTAVVTSSQALVWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLK 456
+ FT G A++T +AL+WTDGRY+ Q E+++ W LM + + P +E W+A NL
Sbjct: 89 TTFTIWGGLALITMKEALLWTDGRYFLQAEKQLS-DHWELM--CMGEDPPVEVWIADNLS 145
Query: 457 DGDVVGVDPQTMTRDEWTPIQTALKKISAQLVPISNNLVDDV 582
D V+G++P ++ D + A K L +S++LVD+V
Sbjct: 146 DEAVIGINPWCISVDTAQRYEHAFSKKHQTLFQLSSDLVDEV 187
Score = 55.2 bits (127), Expect = 4e-08
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = +1
Query: 154 LQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAVV 312
L LRALM++ P L A ++P+ DAH SEY+ D R ++IS FTG A +AV+
Sbjct: 11 LDELRALMAAHSPPLHALVVPSDDAHQSEYVAERDKRLQFISGFTGIARSAVL 63
>11_05_0099 -
19044772-19044837,19044896-19045051,19045529-19045653,
19045773-19045844,19045947-19046051,19046509-19046563,
19047334-19047414,19047499-19047633,19048279-19048342,
19048844-19048911,19049082-19049168,19050247-19050501,
19050616-19050738,19050866-19051150,19051712-19051851,
19052385-19052445,19052537-19052637,19052807-19052870,
19053020-19053127
Length = 716
Score = 71.7 bits (168), Expect = 4e-13
Identities = 34/95 (35%), Positives = 58/95 (61%)
Frame = +1
Query: 298 GTAVVTSSQALVWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGV 477
G A++T +AL+WTDGRY+ Q E+++ W LM+ + + P +E W+A NL D VVG+
Sbjct: 112 GLALITMKEALLWTDGRYFLQAEQQLS-DRWKLMR--MGEDPPVEVWIADNLSDEAVVGI 168
Query: 478 DPQTMTRDEWTPIQTALKKISAQLVPISNNLVDDV 582
+P ++ D + A K L +S++L+D++
Sbjct: 169 NPWCISVDTAQRYEHAFSKKHQTLFQLSSDLIDEI 203
Score = 58.4 bits (135), Expect = 4e-09
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +1
Query: 154 LQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAV--VTSSQA 327
L LRALM++ P L A ++P+ DAH SEY+ D RR+++S FTGSA + V ++
Sbjct: 10 LDELRALMAAHSPPLHALVVPSEDAHQSEYVSERDKRRQFVSGFTGSADGTIGWVRVAEV 69
Query: 328 LVWTDGRYYTQFEREV 375
W Y + V
Sbjct: 70 GRWNGRHVYAMLAKVV 85
>04_04_1310 -
32517074-32517193,32517295-32517360,32517468-32517558,
32517741-32517870,32517944-32518032,32518300-32518376,
32518539-32518607,32518800-32518874,32519040-32519135,
32519232-32519396
Length = 325
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 193 VLAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTA 306
++AA + PTA+ HN + AA R+W ++ +A
Sbjct: 3 IVAALVAPTANPHNPLRLIAAAPHRQWRRVAAAASSSA 40
>01_06_0546 +
30124693-30124970,30125711-30125861,30125955-30126137,
30126333-30126407,30126535-30126690,30126909-30127007,
30127075-30127205,30127690-30127771,30127846-30128199
Length = 502
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +1
Query: 196 LAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAVVTSSQALVWTDGRYYTQFEREV 375
+AA I+ T N+ YID ADA +W + S G V+ + T+F++E+
Sbjct: 248 IAAVILGTGS--NAAYIDHADAIPKWHGSLPKS-GNMVINMEWGNFKSSHLPLTEFDQEL 304
Query: 376 DLSAWTLMKQ 405
D + KQ
Sbjct: 305 DAESLNPGKQ 314
>10_08_0980 -
22002818-22003008,22003646-22003750,22003859-22003987,
22004076-22004268,22004270-22004473,22004931-22005071,
22005325-22005486,22005664-22005666
Length = 375
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 118 RKDRNREMSLQRLQALRALMSSQRPVLAAYIIP--TADAHNSEYIDAADARREWISAFTG 291
RK R E+ L QA A+ +Q A I +A EY++AAD+++ +
Sbjct: 128 RKKRKEELRLHAAQARAAVSVAQLAAAIAGIRVGVRTEAGQPEYVEAADSKKMGTVLASA 187
Query: 292 SAGTAVVTSSQA 327
+A A V + A
Sbjct: 188 AALVATVCAEAA 199
>06_03_1041 -
27086661-27086981,27087089-27087295,27087398-27087675,
27088360-27088471
Length = 305
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 367 REVDLSAWTLMKQT-LPDTPTLEKWLASNLKDGDV 468
+ D +W T LPD ++WL+ NLKD V
Sbjct: 265 KTADAESWRKSGATVLPDLVAAQEWLSKNLKDEPV 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,621,116
Number of Sequences: 37544
Number of extensions: 377484
Number of successful extensions: 1000
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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