Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29i23
         (608 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical prote...    26   1.1  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    24   3.3  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           23   7.7  
DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domai...    23   7.7  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            23   7.7  

>AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical protein
           protein.
          Length = 297

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 375 DLPLELRVVSTVGPDESLR*RHNCSASRPGEG 280
           +L L L +V  + P+E LR RH+  + R G G
Sbjct: 100 NLSLSLSLVDMI-PEEKLRGRHSSESDREGMG 130


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = -3

Query: 255 RCIYVLRIMSIGGRYNISCQHGTLTRH*RSERLQAL*RHLAVAIFSVDRTVTGQSAFCQA 76
           RC  +  +     RY     HG LT       L+ + R  A+ +    RTV  ++A   A
Sbjct: 790 RCRLLAAVADSTMRYAAPVWHGALTNRECRSLLKRVQRKAAIRVARTFRTVRYETAVLPA 849

Query: 75  TLM 67
            L+
Sbjct: 850 GLV 852


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = +2

Query: 368  GRSTCQRGL**NRHYRTLPLWRNGWPRTSKTVT*SAW 478
            GRS  +  +      RT+ +W++ W   + T   + W
Sbjct: 924  GRSITKAAIRLEERQRTITMWQSQWDAEADTSRYTRW 960


>DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domain
           protein protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 315 RHNCSAS--RPGEGGYPLASGVRC 250
           RH+ + S  RP +G  P+A G +C
Sbjct: 182 RHSTTGSSVRPSKGLIPVAPGAKC 205


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 273 DIRLHRVGWHCSCDVI 320
           DIRL    W C CD +
Sbjct: 914 DIRLAFNAWSCECDYV 929


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,630
Number of Sequences: 2352
Number of extensions: 13250
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59291487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)