Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29i23
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039716-4|AAB96739.1|  616|Caenorhabditis elegans Aminopeptidas...   122   2e-28
AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical ...    77   7e-15
Z82070-7|CAB04909.1|  321|Caenorhabditis elegans Hypothetical pr...    31   0.85 
Z82070-6|CAB04910.1|  321|Caenorhabditis elegans Hypothetical pr...    31   0.85 
U20864-8|AAC46665.2|  330|Caenorhabditis elegans Peroxisome asse...    29   3.4  
U29379-1|AAF99982.2|  319|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>AF039716-4|AAB96739.1|  616|Caenorhabditis elegans Aminopeptidase p
           protein 1 protein.
          Length = 616

 Score =  122 bits (294), Expect = 2e-28
 Identities = 63/153 (41%), Positives = 92/153 (60%), Gaps = 7/153 (4%)
 Frame = +1

Query: 142 SLQRLQALRALMSSQRPV-------LAAYIIPTADAHNSEYIDAADARREWISAFTGSAG 300
           +L++L  LR+L  S+R +       + AY++P+ DAH+SEY+   D R +++S F+GS  
Sbjct: 3   ALEKLAKLRSLFHSERVLALTSSKPMVAYLLPSTDAHHSEYLADYDFRVKFLSGFSGSNA 62

Query: 301 TAVVTSSQALVWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVD 480
             VVT  +AL+WTDGRY+TQ   ++D ++W LMKQ  PD+ T+  WL   L+ G V+G D
Sbjct: 63  YVVVTDREALLWTDGRYFTQAGNQLDSNSWKLMKQGQPDSITVVDWLVRELERGSVIGFD 122

Query: 481 PQTMTRDEWTPIQTALKKISAQLVPISNNLVDD 579
           P   T D  +     LK    Q V I  NLVD+
Sbjct: 123 PTLSTFDAGSKTFKRLKAAGLQPVSIPGNLVDE 155


>AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.2 protein.
          Length = 1061

 Score = 77.4 bits (182), Expect = 7e-15
 Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
 Frame = +1

Query: 151 RLQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAVVTSSQAL 330
           R  + R L  + R  +AAYI+P  DAH +E I    +R ++++ ++G +G A++T ++A+
Sbjct: 462 RFASERTLGYTDRTPIAAYILPNTDAHQNELIPDFFSRVQFLNGYSGPSGLAIITLNEAM 521

Query: 331 VWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVDPQTMTRDEWT 510
            W D       E +VD  +WT+  +       +  WLA  L     VG DP T+    W 
Sbjct: 522 FWVDNGLLKSAESQVDDRSWTV--KEYQSVEEVINWLAKILPPKSKVGFDP-TLVSYTWH 578

Query: 511 PIQTALKKISA---QLVPISNNLVDDV 582
             Q AL+ +++   +LV I  N+VD++
Sbjct: 579 --QQALQSMTSDRFELVAIPGNIVDEI 603


>Z82070-7|CAB04909.1|  321|Caenorhabditis elegans Hypothetical
           protein W04E12.8 protein.
          Length = 321

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
 Frame = -1

Query: 482 GSTPTTSPSLRFEASHFSKVGV--SGSVCFIKVHADKSTSLSNCV*Y------LPSVQTR 327
           G+   T PS+ F+ S++ ++G   SGS C I+   D + S   C  Y       P + T 
Sbjct: 96  GTWKWTDPSVTFDYSNW-QLGEPQSGSDCAIQDKGDGTWSAIGCTSYRPYVCVTPVIMTA 154

Query: 326 ACDDVTTAVP 297
            C  +TT +P
Sbjct: 155 TCPPITTPIP 164


>Z82070-6|CAB04910.1|  321|Caenorhabditis elegans Hypothetical
           protein W04E12.6 protein.
          Length = 321

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
 Frame = -1

Query: 482 GSTPTTSPSLRFEASHFSKVGV--SGSVCFIKVHADKSTSLSNCV*Y------LPSVQTR 327
           G+   T PS+ F+ S++ ++G   SGS C I+   D + S   C  Y       P + T 
Sbjct: 96  GTWKWTDPSVTFDYSNW-QLGEPQSGSDCAIQDKGDGTWSAIGCTSYRPYVCVTPVIMTA 154

Query: 326 ACDDVTTAVP 297
            C  +TT +P
Sbjct: 155 TCPPITTPIP 164


>U20864-8|AAC46665.2|  330|Caenorhabditis elegans Peroxisome
           assembly factor protein13 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +1

Query: 235 SEYIDAADARREWISAFTGSAGTAVVTSSQALVWTDGRYYTQFEREVD-LSAWTLMKQTL 411
           S+ + AA+ +R+W      + G A   ++QAL      +    E+E+  ++  TL     
Sbjct: 218 SQMVQAAEEKRKW------ATGAAPHYTAQALF----DFQASNEQELSFMNGETLRVAPK 267

Query: 412 PDTPTLEKWLASNLKDGDVVGVDPQTMTR 498
            + P +  WL +++ DG  +G+ P    R
Sbjct: 268 EEQPRVRGWLLASVADGSRIGLVPINYVR 296


>U29379-1|AAF99982.2|  319|Caenorhabditis elegans Hypothetical
           protein K05B2.2a protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 323 CDDVTTAVPADPVKADIHSRLASAASMYSEL 231
           CD V  +VP +P K   H +  S +SM + L
Sbjct: 87  CDLVDESVPLEPAKPYFHPKQTSTSSMVTSL 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,401,594
Number of Sequences: 27780
Number of extensions: 302721
Number of successful extensions: 753
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)