Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29i18
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 93 2e-20
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 56 2e-09
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 54 1e-08
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 51 1e-07
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 50 2e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 48 5e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 47 2e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 45 7e-06
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 45 7e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 9e-06
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 44 1e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 44 2e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 43 2e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 41 1e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 40 2e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 40 2e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 40 3e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 39 4e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 39 4e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 37 0.001
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 36 0.002
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 36 0.004
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.010
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.017
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.029
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 32 0.038
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 32 0.051
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 31 0.089
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 30 0.15
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 29 0.27
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 29 0.47
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 1.9
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 26 2.5
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 26 2.5
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 26 2.5
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 2.5
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 25 5.8
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 93.1 bits (221), Expect = 2e-20
Identities = 50/132 (37%), Positives = 76/132 (57%), Gaps = 6/132 (4%)
Frame = +2
Query: 92 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAE-APGRDDXRKLFVGGLSWETTXKELRD 268
+ +N D +NQ + +G +S + N+ E +P + K+F+GGL+WETT LRD
Sbjct: 123 DGENSKNDNYNENQ-SALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 269 HFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKXVDPXXAKAR 448
+F +GE+ V D TGRSRGF F+ FK P+ +++VM+ EH ++ K +DP A R
Sbjct: 182 YFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPR 240
Query: 449 H-----GKIFVG 469
K+FVG
Sbjct: 241 EEQEKTAKMFVG 252
Score = 55.6 bits (128), Expect = 4e-09
Identities = 23/71 (32%), Positives = 41/71 (57%)
Frame = +2
Query: 215 KLFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 394
K+FVGG+ + T +E R+ F +G + + D +TGR RGF F+ ++ +++ M+
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 395 GEHTINNKXVD 427
TI+ K V+
Sbjct: 308 PYITIHGKPVE 318
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 56.4 bits (130), Expect = 2e-09
Identities = 27/97 (27%), Positives = 49/97 (50%)
Frame = +2
Query: 116 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDXRKLFVGGLSWETTXKELRDHFGAYGEIX 295
I ++ +G S ++ ++ LFVG L +ETT +L++HFG G+I
Sbjct: 196 IKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIR 255
Query: 296 SINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 406
+ + T +TG+ +GF F+ F ++ K M G ++
Sbjct: 256 RVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 54.0 bits (124), Expect = 1e-08
Identities = 25/64 (39%), Positives = 36/64 (56%)
Frame = +2
Query: 218 LFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 397
+FVG LS+ T +L FG G+I SI + TDP +GR +GF ++ F +S K +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 398 EHTI 409
H I
Sbjct: 428 GHFI 431
Score = 49.2 bits (112), Expect = 3e-07
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +2
Query: 218 LFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA- 394
+FVG LSW + L F YG I V D +GRS+G+ ++ F+ PE+ +AA
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 395 GEHTINNKXVD 427
G I+ + V+
Sbjct: 325 GTKEIDGRMVN 335
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 50.8 bits (116), Expect = 1e-07
Identities = 24/67 (35%), Positives = 36/67 (53%)
Frame = +2
Query: 200 RDDXRKLFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID 379
+D R +FVG L++E + L +FG G I + + DP T +GFA+I FK +D
Sbjct: 266 QDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVD 325
Query: 380 KVMAAGE 400
K + E
Sbjct: 326 KALLLNE 332
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 50.0 bits (114), Expect = 2e-07
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Frame = +2
Query: 182 SAEAPGRDDXRK--LFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIV 355
S G+++ RK LFVG L +++ + L+ HF G++ S+ + TD +GR +G+AF+
Sbjct: 80 SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVE 139
Query: 356 FKAPES--IDKVMAAGEHTI 409
F P++ I K + HTI
Sbjct: 140 FINPKTDVISKALKF-HHTI 158
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 48.4 bits (110), Expect = 5e-07
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +2
Query: 206 DXRKLFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 385
D + ++VG + + T +EL+ HF + G + + + D TG +GFA+I F P +
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
Query: 386 M 388
+
Sbjct: 113 L 113
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 46.8 bits (106), Expect = 2e-06
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +2
Query: 200 RDDXRKLFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVF 358
RDD L V LS +T +ELRD F +G I + + D TGR++GFAF+ +
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 44.8 bits (101), Expect = 7e-06
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +2
Query: 143 NAENGGGDSQDHNSAEAPGRDDXR---KLFVGGLSWETTXKELRDHFGAYGEIXSINVKT 313
+ E+ G S D NS RD+ +FV L +E T +EL +HF +G + +
Sbjct: 251 DVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVK 310
Query: 314 DPNTGRSRGFAFIVFK 361
DP T RS G FI F+
Sbjct: 311 DPATDRSLGRGFIKFR 326
Score = 40.7 bits (91), Expect = 1e-04
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +2
Query: 218 LFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 382
LFV L+++T +L + F G I V T+P TG +RG+ F+ F E +
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQR 61
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 44.8 bits (101), Expect = 7e-06
Identities = 28/100 (28%), Positives = 45/100 (45%)
Frame = +2
Query: 149 ENGGGDSQDHNSAEAPGRDDXRKLFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTG 328
E G G ++ P VG LS++ T +L D FG + SI + DP T
Sbjct: 74 EGGMGSGYQRDAIPIPSEPPFTA-HVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTE 130
Query: 329 RSRGFAFIVFKAPESIDKVMAAGEHTINNKXVDPXXAKAR 448
RSRGF ++ F+ +++ +A + + V A+ R
Sbjct: 131 RSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.4 bits (100), Expect = 9e-06
Identities = 22/82 (26%), Positives = 40/82 (48%)
Frame = +2
Query: 125 DNQLNGNAENGGGDSQDHNSAEAPGRDDXRKLFVGGLSWETTXKELRDHFGAYGEIXSIN 304
+++++ N E+ D ++ SA + LFV G++ EL+ F +G + +
Sbjct: 72 EDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVR 131
Query: 305 VKTDPNTGRSRGFAFIVFKAPE 370
+ +P T SRGF F+ F E
Sbjct: 132 IMREPVTKASRGFGFLSFSTVE 153
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 44.0 bits (99), Expect = 1e-05
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = +2
Query: 173 DHNSAEAPGRDDXRKLFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFI 352
D+N + G + ++FV +S T ++LR HF ++GE+ +++K +P TG S G I
Sbjct: 82 DYNE-NSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCI 140
Query: 353 VFKAPESI 376
F SI
Sbjct: 141 SFDKRSSI 148
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 43.6 bits (98), Expect = 2e-05
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +2
Query: 218 LFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVM 388
LF+ L E + L+ F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
Score = 35.5 bits (78), Expect = 0.004
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = +2
Query: 218 LFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 397
L+VG L T L + F + G + SI V D T RS G+A++ F E +K +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 398 EHTI 409
+T+
Sbjct: 142 NYTL 145
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 43.2 bits (97), Expect = 2e-05
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 203 DDXRKLFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 361
D + +F+ LS++T ++ F YG I I V + TG+S G+AF+VF+
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 40.7 bits (91), Expect = 1e-04
Identities = 21/74 (28%), Positives = 39/74 (52%)
Frame = +2
Query: 206 DXRKLFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 385
D +++G L ++ ++ F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS---T 85
Query: 386 MAAGEHTINNKXVD 427
+ A ++ N K +D
Sbjct: 86 VLAVDNMTNVKLLD 99
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 39.9 bits (89), Expect = 2e-04
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2
Query: 206 DXRKLFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKV 385
D R +FV L+ T +EL D F G + + D +GRS+G A++ F +S+
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297
Query: 386 MA 391
+A
Sbjct: 298 IA 299
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 39.9 bits (89), Expect = 2e-04
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Frame = +2
Query: 119 TTDNQLNGNAENGGGDSQDHNSAEAPGRDDXRKLFVGGLSWETTXKELRDHFGAYGEIXS 298
T +Q+ + + S + ++ A DD R +FVG LS T E+R F G +
Sbjct: 14 TVQDQVEASVDAAVHASAEQSNTPAQQADDFR-VFVGRLSTSTKKSEIRSLFETVGTVRK 72
Query: 299 INVKTDPNTGRSR----GFAFIVFKAPESIDKVMAAGEHTINNKXVD 427
+ + +R G AF+ F E +DK + T+N K +D
Sbjct: 73 VTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAI----ETLNGKTLD 115
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.5 bits (88), Expect = 3e-04
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +2
Query: 218 LFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK----APESIDKV 385
++VG L W T+ + L D F G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.7 bits (86), Expect = 4e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +2
Query: 218 LFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 361
LF+ LS++ T +E+ D FG YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 38.7 bits (86), Expect = 4e-04
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +2
Query: 218 LFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESID-KVMAA 394
LFVG L + L D F A G++ GRS+G+ F+ + + E+ D + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 395 GEHTINNKXVDPXXAKARHGK 457
+ NK + A R GK
Sbjct: 161 NNQFLMNKPITVSYAFKREGK 181
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 37.1 bits (82), Expect = 0.001
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +2
Query: 218 LFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 382
LFV L+ T ++L F +G+I S V D TG S +AFI F ES++K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 36.3 bits (80), Expect = 0.002
Identities = 17/71 (23%), Positives = 34/71 (47%)
Frame = +2
Query: 218 LFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 397
+FVG + ++ + +++ + F G + + + DP TG +G+ F F E+ A
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSET----TAMA 64
Query: 398 EHTINNKXVDP 430
+NN + P
Sbjct: 65 VRKLNNSELGP 75
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.5 bits (78), Expect = 0.004
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +2
Query: 164 DSQDHNSAEAPGRD-DXRKLFVGGLSWE--TTXKELRDHFGAYGEIXSINVKTDPNTGRS 334
DS +S P D L+V L T +L D F +G I S + PN+G S
Sbjct: 365 DSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGIS 424
Query: 335 RGFAFIVFKAPES 373
+G+ F+ F+ E+
Sbjct: 425 KGYGFVAFRQIEA 437
Score = 29.5 bits (63), Expect = 0.27
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 173 DHNSAEAPGR--DDXRKLFVGGLSWETTXKELRDHFGAYGEIXSI 301
+++ PG+ D+ ++VG + + +E+ HF YG++ SI
Sbjct: 2 NNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 34.3 bits (75), Expect = 0.010
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 218 LFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 367
++VG + +E +++ D F G + S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 33.5 bits (73), Expect = 0.017
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 215 KLFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFK 361
+LFVG L + + L F Y + V D G++RGF F+ FK
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK 78
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 32.7 bits (71), Expect = 0.029
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 218 LFVGGLSWETTXKELRDHFGA-YGEIXSINVKTDPNTGRSRGFAFIVF 358
+FVG LS ++ F + Y S + TDP T SRG+ F+ F
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 27.5 bits (58), Expect = 1.1
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 218 LFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTG 328
+FVGGLS + +EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 32.3 bits (70), Expect = 0.038
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +2
Query: 218 LFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFI-VFKAPESIDKVMAA 394
++VG LS+ TT +++ F GEI I + D T GF F+ F+ +++D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 395 GEHTINNKXV 424
+++ + +
Sbjct: 94 SRTSLDERII 103
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 31.9 bits (69), Expect = 0.051
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 212 RKLFVGGLSWETTXKELRDHFGAYGEIXSINV--KTDPNTGRSRGFAFIVFKAPE 370
++++VGGLS +L F +G + ++ + K+ P G + FA++ F+ E
Sbjct: 5 KRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.1 bits (67), Expect = 0.089
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +2
Query: 203 DDXRKLFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAPESIDK 382
D K+++ L ++ + +G++ S + + G S+GF F FK P +
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
Query: 383 VMAA--GEHTINNK 418
++ G+ T NK
Sbjct: 367 AISGLDGKDTYGNK 380
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 30.3 bits (65), Expect = 0.15
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 254 KELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 367
++L + F +G I S + + P+T S+G+ F+ F P
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 29.5 bits (63), Expect = 0.27
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 215 KLFVGGLSWETTXKELRDHF-GAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 367
K+ V L + T ++++ F + G +++ PN GRS+G A I+F P
Sbjct: 56 KIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 28.7 bits (61), Expect = 0.47
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 212 RKLFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPN 322
R +F+G L KE+ + FG +G+I I + + N
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 225 TKSFLXSSRPGASALL*SCESPPPFSAFPLSWLSVVIS 112
T SFL + R +L C S P +AF W+ ++ S
Sbjct: 205 TSSFLETQRSYRIYMLIDCPSNPKATAFARYWMHLICS 242
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 26.2 bits (55), Expect = 2.5
Identities = 24/90 (26%), Positives = 39/90 (43%)
Frame = +2
Query: 188 EAPGRDDXRKLFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPNTGRSRGFAFIVFKAP 367
E P LF+ G+ E ++R HF YG + S+ + R++ AF+ FK
Sbjct: 204 EPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVC-----SHRAK-CAFVNFKTR 257
Query: 368 ESIDKVMAAGEHTINNKXVDPXXAKARHGK 457
S + +AA N ++ K + GK
Sbjct: 258 SSAE--IAAAASPDGNVVIEGFRLKVQWGK 285
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 335 RGFAFIVFKAPESIDKVMAAGEHTINN 415
RGFA IVF A S ++V G H +N+
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNH 213
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 26.2 bits (55), Expect = 2.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 212 RKLFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPN 322
R +F+G L T E+R+ +G I I + T+ N
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +2
Query: 179 NSAEAPGRDDXRKLFVGGLSWETTXKELRDHFGAYGEIXSINVKTDPN 322
N A A R +++G T + L++ F +GEI +N + N
Sbjct: 403 NIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 215 KLFVGGLSWETTXKELRDHFGAYGEI 292
+LFVG + + T +++ D F YG+I
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQI 30
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 5.8
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = -2
Query: 442 FSXLWVYXLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFXV 281
F+ L L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,851,026
Number of Sequences: 5004
Number of extensions: 34042
Number of successful extensions: 124
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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