Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29i18
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.23 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   1.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   5.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 0.23
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 429 GSTXLLLMVCSPAAMTLSIDSGALNTM 349
           G+T       SPA  ++S+DSG++NT+
Sbjct: 545 GNTNSSARDSSPAIESISVDSGSINTV 571



 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 116 ITTDNQLNGNAENGGGDSQDHNSAEA 193
           +T+ + +N N+ NG  +S   +S+ A
Sbjct: 532 LTSSSNVNNNSGNGNTNSSARDSSPA 557


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 125 DNQLNGNAENGGGDSQDHNSAEAPGRDDXRK 217
           DN+ NGN +N  G+ Q+ N      ++D ++
Sbjct: 487 DNKQNGNRQN--GNKQNDNKQNGNRQNDNKR 515



 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 125 DNQLNGNAENGGGDSQDHNS 184
           DN+ NGN +N   ++Q+ N+
Sbjct: 512 DNKRNGNRQNDNQNNQNDNN 531



 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 128 NQLNGNAENGGGDSQDHNSAEAPGRD 205
           N  N NA+N   D+Q+ N+  A  ++
Sbjct: 426 NAGNQNADNQNADNQNANNQNADNQN 451



 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 125 DNQLNGNAENGGGDSQDHNSAE 190
           DNQ N N +N   D+Q H+S++
Sbjct: 522 DNQNNQN-DNNRNDNQVHHSSK 542



 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 128 NQLNGNAENGGGDSQDHNSAEAPGRDD 208
           N+ N N  NG   + + N+     R+D
Sbjct: 508 NRQNDNKRNGNRQNDNQNNQNDNNRND 534


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 92  NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAE 190
           NN+N   +   +N  N N  NG G S ++N+ +
Sbjct: 240 NNNNNNNNNNNNNGANDNG-NGNGASNNNNNGD 271



 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 92  NNDNFAQDITTDNQLNGNAENGGGDSQDHNSA 187
           N +  A +   +N  N N  NG  D+ + N A
Sbjct: 232 NANTNASNNNNNNNNNNNNNNGANDNGNGNGA 263


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 461 KSSHVVL*XSXGLLSCC*WCVH 396
           K + +V   S GLL+ C W ++
Sbjct: 470 KVARIVFPASFGLLNICYWVIY 491


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -1

Query: 425 LLSCC*WC 402
           ++SCC WC
Sbjct: 8   VMSCCCWC 15


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,590
Number of Sequences: 438
Number of extensions: 2349
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)