Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29i16
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0389 + 17465328-17465712,17465855-17465908,17466061-17468111     30   1.5  
12_01_0660 + 5585172-5585356,5585717-5585761,5586942-5587026,558...    27   7.7  
10_08_0843 - 20960249-20960446,20960583-20960987,20961092-209612...    27   7.7  
10_05_0033 - 8415692-8415738,8416084-8416174,8416568-8416821,841...    27   7.7  

>10_08_0389 + 17465328-17465712,17465855-17465908,17466061-17468111
          Length = 829

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 478 VRYNIIYNCL-LRGMIIQYQITLRTVRELSKKSRFF 374
           V YN++ N L L+G +IQ +I L ++RE   K R F
Sbjct: 694 VTYNLLINVLCLKGKVIQAEILLESLRENGIKLRKF 729


>12_01_0660 +
           5585172-5585356,5585717-5585761,5586942-5587026,
           5587666-5587730,5587887-5587986,5588209-5588250,
           5588400-5588441,5588659-5588952
          Length = 285

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 78  YSNRIKNSKKLYNVTVLLLLCIKRVV 1
           YSN     KK Y+V + L+LC+K  +
Sbjct: 57  YSNNNNYLKKDYSVLIFLVLCVKATI 82


>10_08_0843 -
           20960249-20960446,20960583-20960987,20961092-20961232,
           20961324-20961471,20961742-20961863,20962372-20962412,
           20962671-20962839
          Length = 407

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 539 LHPDLDRPSNFPLLYLHRTSCTL*HHLQLPPSRHD-HSIPNY 417
           LHPD D     P   LHR S T        PS+ D  SIP++
Sbjct: 294 LHPDHDNGVRQPETLLHRRSLTAFSPASTVPSQFDKDSIPSH 335


>10_05_0033 -
           8415692-8415738,8416084-8416174,8416568-8416821,
           8417473-8417482
          Length = 133

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 89  FIYSTDKHLAISVNIKYFFIFELI 160
           ++ S+DKH+A  ++I +FF F +I
Sbjct: 82  WLNSSDKHIAEGISIGHFFFFGII 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,898,488
Number of Sequences: 37544
Number of extensions: 302392
Number of successful extensions: 583
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)