Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29i16
         (561 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         27   0.32 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   5.2  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    23   6.8  
AJ973475-1|CAJ01522.1|  127|Anopheles gambiae hypothetical prote...    23   9.0  
AJ697728-1|CAG26921.1|  127|Anopheles gambiae putative sensory a...    23   9.0  

>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 27.5 bits (58), Expect = 0.32
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -2

Query: 557 IPTCKSLHPDLDRPSNFPLLYLHRTSCTL*HHLQLPPSRH 438
           +P  +  HP +  P++ PL Y    +  + HH   P   H
Sbjct: 128 LPHVQQHHPSVHHPAHHPLHYQPAAAAAMHHHHHHPHHHH 167


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 258 GTGPNTVSTFEVILFNNT 205
           GTGP  +S +  I+F+N+
Sbjct: 68  GTGPRAMSAYVEIIFDNS 85


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 162 LINSKIKKYLMFTLIARCLSVL 97
           L+   I KYL+FT I   +S+L
Sbjct: 290 LVLPLIAKYLLFTFIMNTVSIL 311


>AJ973475-1|CAJ01522.1|  127|Anopheles gambiae hypothetical protein
           protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +1

Query: 262 KCLGSNFNSRASSDDLHPLLQRATKANCRCIREPLLSGKI 381
           KCL          ++L  +L  A + NC    E   SG I
Sbjct: 45  KCLMDEGRCTPDGNELKKILPEALQTNCEKCSEKQRSGAI 84


>AJ697728-1|CAG26921.1|  127|Anopheles gambiae putative sensory
           appendage protein SAP-2 protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +1

Query: 262 KCLGSNFNSRASSDDLHPLLQRATKANCRCIREPLLSGKI 381
           KCL          ++L  +L  A + NC    E   SG I
Sbjct: 45  KCLMDEGRCTPDGNELKKILPEALQTNCEKCSEKQRSGAI 84


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,291
Number of Sequences: 2352
Number of extensions: 13443
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52563375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)