Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29i16
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF025454-7|AAC71154.3|  367|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF039053-14|AAW88407.1|  314|Caenorhabditis elegans Hypothetical...    28   5.3  
AF026213-8|AAB71303.1|  226|Caenorhabditis elegans Hypothetical ...    27   7.0  
AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical ...    27   7.0  

>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical protein
            F29G6.3b protein.
          Length = 1785

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 287  HEHLAMTFTHFYREPPKQIVDVFENPFCLEKSGFLRQFPYSSKGNLVLNDH 439
            HEH     +H Y  PP Q     ++P  L    F+ Q P+ +K N V+++H
Sbjct: 1230 HEHYQ---SHSYL-PPSQKSTSHQSPPKLINHSFVPQIPHKTKDNQVVHEH 1276


>AF025454-7|AAC71154.3|  367|Caenorhabditis elegans Hypothetical
           protein F34D6.4 protein.
          Length = 367

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 47  SFLLFFILFEYIHLFIYSTDKHLAISVNI-KYFFIFELI 160
           SFL FF +F    +++ +   H+  +V   K+FFI   I
Sbjct: 44  SFLFFFSIFYVFKMYVQNVKDHITFAVFFWKFFFILAFI 82


>AF039053-14|AAW88407.1|  314|Caenorhabditis elegans Hypothetical
           protein C45H4.18 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 41  LYSFLLFFILFEYIHLFIYSTDKHLAISVNIKYFFIFELIRI 166
           LY+   FF+L + IH++I S       S+N + F  F ++++
Sbjct: 34  LYTIPTFFVLLKMIHVYIKSKKHQTMRSLNPEVFRQFLIMQV 75


>AF026213-8|AAB71303.1|  226|Caenorhabditis elegans Hypothetical
           protein F08F1.3 protein.
          Length = 226

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +2

Query: 8   RFIHNNSRTVTLYSFLLFFILFEYIHLFIYSTDKHLAISVNIKYFFIFELI 160
           R   ++ +  T+++ L+F I+  +I  F+  + KH+  S NIK+  +  L+
Sbjct: 124 RMSKSSEKLKTVHNSLIFLIVI-FIAKFVNFSFKHVVFSSNIKFLHLKILV 173


>AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical
          protein T21G5.2 protein.
          Length = 109

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 44 YSFLLFFILFEYIHLFIY 97
          + FL+ F++F YIH+F Y
Sbjct: 30 FIFLIQFVIFTYIHIFSY 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,112,781
Number of Sequences: 27780
Number of extensions: 274204
Number of successful extensions: 698
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)