Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29i16
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   3.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.5  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/68 (20%), Positives = 30/68 (44%)
 Frame = -3

Query: 517 RRIFHYCTSTELLVRYNIIYNCLLRGMIIQYQITLRTVRELSKKSRFFQTKGVLEYIDNL 338
           +++   C   ++   ++ +YN LL  +   Y +  R + E   +S+F    G   Y   +
Sbjct: 661 KQVILKCNIQDMSFLFSQLYNALLILISTVYAVKTRKIPENFNESKFI---GFTMYTTCI 717

Query: 337 LWWLSVEV 314
           +W   V +
Sbjct: 718 IWLAFVPI 725


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/68 (20%), Positives = 30/68 (44%)
 Frame = -3

Query: 517 RRIFHYCTSTELLVRYNIIYNCLLRGMIIQYQITLRTVRELSKKSRFFQTKGVLEYIDNL 338
           +++   C   ++   ++ +YN LL  +   Y +  R + E   +S+F    G   Y   +
Sbjct: 751 KQVILKCNIQDMSFLFSQLYNALLILISTVYAVKTRKIPENFNESKFI---GFTMYTTCI 807

Query: 337 LWWLSVEV 314
           +W   V +
Sbjct: 808 IWLAFVPI 815


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 162 LINSKIKKYLMFTLIARCLSVL 97
           L+   I KYL+FT I   +S+L
Sbjct: 291 LVLPLIAKYLLFTFIMNTVSIL 312


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 32  TVTLYSFLLFFILFEY---IHLFIYSTDKHLAISVNIKYFFIF 151
           T+T  SFLLF +L +    ++ FI   +     +++ KY  IF
Sbjct: 81  TITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIF 123


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 141 KYLMFTLIARCLSVL 97
           KYL+FT++   LSV+
Sbjct: 301 KYLLFTMVLVTLSVV 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,263
Number of Sequences: 438
Number of extensions: 3209
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)