Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29i14
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358...    30   0.90 
03_02_0338 + 7614199-7614450,7614518-7614703,7614815-7614927,761...    29   2.1  
11_01_0433 - 3323372-3324616,3324708-3324905                           27   6.3  
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444...    27   8.4  

>06_01_0501 -
           3587390-3587528,3587922-3588031,3588122-3588187,
           3588293-3588410,3588499-3588554,3588647-3588766,
           3588937-3589035,3589443-3589490,3589534-3589545,
           3590353-3590418,3591412-3591471,3592061-3592162,
           3592405-3592426,3592959-3593041,3593166-3593293,
           3593775-3593881,3594376-3594845
          Length = 601

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 347 LPVNIAGYTITEAELPGEVIYWTTQYLTEKQCPLTLMTPLRRIVL 481
           +P+ + GY I +  + G ++YWTT  L      L+L     + VL
Sbjct: 335 IPLFLIGYVIPQITIQGSLVYWTTNGLITVAQQLSLKNDAVKKVL 379


>03_02_0338 +
           7614199-7614450,7614518-7614703,7614815-7614927,
           7615023-7615206,7615343-7615440,7616113-7616578,
           7617342-7617683
          Length = 546

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 373 CIPSYVHWQLVFGVHCGRKVFEKYPIRCQIVV 278
           C P Y  W+ + G+H  R +F++   R  +VV
Sbjct: 355 CTPLYFVWEKLIGLHDCRSLFKRAAARLPVVV 386


>11_01_0433 - 3323372-3324616,3324708-3324905
          Length = 480

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 373 CIPSYVHWQLVFGVHCGRKVFEKYPIRCQIVV 278
           C P Y  W+   GVH G  V  +   R  +V+
Sbjct: 339 CTPLYFVWEKAIGVHGGAGVLRRAAARLPVVL 370


>02_01_0598 +
           4440018-4440070,4440627-4440693,4440794-4440926,
           4441075-4441120,4442470-4442521,4442601-4442753,
           4443338-4443457,4443549-4443714,4443822-4443934,
           4444049-4444120,4444992-4445213,4445270-4445317,
           4445639-4445697,4445809-4445887,4445982-4446119,
           4446327-4446551,4446643-4447430,4447548-4447723,
           4447911-4448169,4448646-4448707,4451055-4451212,
           4451618-4451743,4452197-4452260,4452386-4452494,
           4452607-4452760,4453055-4453178,4453257-4453333,
           4453442-4453494,4453673-4453727,4453833-4454021
          Length = 1379

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 293 SYRVFFENFAATVNPEDQLPVNIAGYTITEAELPGEVIYWTTQYLTEKQCPLTLMTPLRR 472
           S R  FE+    +  E        G+ +  A+  GE++   T+ LT K+ P+   T + R
Sbjct: 472 SQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIP--TKVAR 529

Query: 473 IVL 481
           ++L
Sbjct: 530 LML 532


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,640,608
Number of Sequences: 37544
Number of extensions: 214982
Number of successful extensions: 472
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)