Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29i14
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026209-10|AAB71273.2|  355|Caenorhabditis elegans Serpentine r...    32   0.27 
U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase ...    28   3.3  
U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase ...    28   3.3  
U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    28   3.3  
U29376-4|AAM51504.1|  682|Caenorhabditis elegans Protein kinase ...    28   3.3  
U29376-3|AAM51503.1|  680|Caenorhabditis elegans Protein kinase ...    28   3.3  
AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical ...    27   10.0 

>AF026209-10|AAB71273.2|  355|Caenorhabditis elegans Serpentine
           receptor, class i protein4 protein.
          Length = 355

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = -2

Query: 433 FCQILGSPIDNFARKFSLGDCIPSYVHWQLVFGVHCG--RKVFEKYPIRCQI-VVFVTHL 263
           FCQ+    I     +F +    P+Y  + ++ G++CG  R+V  K+ I   I + F T +
Sbjct: 50  FCQLYVQ-ITALITEFDISIVNPAYFFFPMIGGMNCGKMREVQVKFGITSHICITFFTFI 108

Query: 262 RCLKFSQFIC*FI 224
            CL+    +  FI
Sbjct: 109 LCLQVPALLTCFI 121


>U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase C2
           B isoform protein.
          Length = 682

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -2

Query: 349 QLVFGVHCGRKVF--EKYPIRCQIVVFVTHLRCLKFSQFIC 233
           Q  F  HC   ++   K   +CQ+   V H RC +F  F C
Sbjct: 48  QPTFCSHCKDFLWGITKQGFQCQVCTLVVHKRCHEFVNFAC 88


>U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase C2
           A isoform protein.
          Length = 680

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -2

Query: 349 QLVFGVHCGRKVF--EKYPIRCQIVVFVTHLRCLKFSQFIC 233
           Q  F  HC   ++   K   +CQ+   V H RC +F  F C
Sbjct: 48  QPTFCSHCKDFLWGITKQGFQCQVCTLVVHKRCHEFVNFAC 88


>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
           protein 2, isoformc protein.
          Length = 936

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -2

Query: 349 QLVFGVHCGRKVF--EKYPIRCQIVVFVTHLRCLKFSQFIC 233
           Q  F  HC   ++   K   +CQ+   V H RC +F  F C
Sbjct: 188 QPTFCSHCKDFLWGITKQGFQCQVCTLVVHKRCHEFVNFAC 228


>U29376-4|AAM51504.1|  682|Caenorhabditis elegans Protein kinase c
           protein 2, isoformb protein.
          Length = 682

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -2

Query: 349 QLVFGVHCGRKVF--EKYPIRCQIVVFVTHLRCLKFSQFIC 233
           Q  F  HC   ++   K   +CQ+   V H RC +F  F C
Sbjct: 48  QPTFCSHCKDFLWGITKQGFQCQVCTLVVHKRCHEFVNFAC 88


>U29376-3|AAM51503.1|  680|Caenorhabditis elegans Protein kinase c
           protein 2, isoforma protein.
          Length = 680

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -2

Query: 349 QLVFGVHCGRKVF--EKYPIRCQIVVFVTHLRCLKFSQFIC 233
           Q  F  HC   ++   K   +CQ+   V H RC +F  F C
Sbjct: 48  QPTFCSHCKDFLWGITKQGFQCQVCTLVVHKRCHEFVNFAC 88


>AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical
           protein C26G2.2 protein.
          Length = 952

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 405 ITSPGSSASVIVYPAMFTGSWSSGFTVAAKFSKNTLYDV 289
           IT   +S     YP+ FT SWS+  TV     ++T   V
Sbjct: 448 ITLSTTSDLTSTYPSTFTSSWSTESTVLTTQQQDTTTSV 486


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,539,226
Number of Sequences: 27780
Number of extensions: 209071
Number of successful extensions: 452
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)