Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29i13
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    28   0.26 
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    25   1.8  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    25   1.8  
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    25   3.2  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    25   3.2  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    24   5.6  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    23   7.5  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    23   7.5  
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    23   9.9  

>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 28.3 bits (60), Expect = 0.26
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 120 YANLEMQIEEEIKYMEIDDGEEIDTVKTFLRNSMSTA 230
           YA   ++ EE +K  +I DG  I  VKT  +N  + A
Sbjct: 48  YAGRVLKDEESLKTYKIQDGHSIHLVKTLGQNPAAAA 84


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 153 FLPQFAFPSLRILANNNLVVGRPRQF 76
           FL   +FP++ +      V+ RP QF
Sbjct: 262 FLKYVSFPAMELRGETEFVIDRPEQF 287


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 13/58 (22%), Positives = 27/58 (46%)
 Frame = +3

Query: 27  ERTVTRWHLLSDNVLLKIGEVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEIDTVK 200
           E ++  W    D  + K+ +   RLN +  EY   E Q+  E+    +D+   ++ ++
Sbjct: 272 EESLKVWARFRDLSITKLKDTYDRLNIHYDEYDG-ESQVSLELMNKMVDELRSLNLIE 328


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 90  AQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEI 188
           A+ LN YL+ YA L  ++ +  K++     EE+
Sbjct: 105 ARFLNEYLEYYARLLAEVVDATKFLPFQLTEEV 137


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 288 KYYLLNCLILMLTRTNHAVPPWT 220
           K Y  N L+ ++ R    VPPWT
Sbjct: 335 KNYTPNALVDLIARILALVPPWT 357


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 210 RNSMSTAEQRDLYALALKLNSLINNI*YKKK 302
           R S +  E+RD Y   LK+    +NI +KKK
Sbjct: 256 RLSYANLEERDKYFSKLKMFIEYSNIVHKKK 286


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 84  EVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEIDTVKTFLRNSM 221
           E    L Y ++E  +L   ++   KY+ +  G+ +D +   L NS+
Sbjct: 488 ESINHLVYLMEEVFHLTDHLKAIKKYLLLGQGDFVDLLMESLGNSL 533


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +3

Query: 126  NLEMQIEEEIKYMEIDDGEEIDTVKTFLRN 215
            +L++Q+  E+K M++    ++DT K+  R+
Sbjct: 1215 SLKIQLLSELKDMKLLGASDVDTCKSLKRS 1244


>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 135 MQIEEEIKYMEIDD--GEEIDTVKTFLRNSMSTAEQRDLYALALKLNS 272
           +Q+ EE      D+  G   D V TFLRN+ S  E   L      LN+
Sbjct: 234 IQVLEEQSSPSFDEKTGLPKDPVYTFLRNTDSGTETLGLAGRGFPLNA 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,142,760
Number of Sequences: 5004
Number of extensions: 19398
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)