Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29i11
         (229 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    27   0.44 
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    23   5.4  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    23   5.4  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    23   7.2  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    22   9.5  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    22   9.5  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    22   9.5  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    22   9.5  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    22   9.5  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    22   9.5  

>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 101 SDQ*NNVKHCVVTRSSKPRSRYLRARPRTGRQTLHAT 211
           S Q N+V H +  R +K   +  +A+P T R   H T
Sbjct: 465 SQQRNSVSHEIQNRGTKGSPKEPKAKPSTERPETHRT 501


>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1163

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 121  KTLRRNSLEQAAVSLPARPSSHRP 192
            KT  RN  ++A    PA+PSS +P
Sbjct: 961  KTQERNIRKRAMKRDPAKPSSAQP 984


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 146 SSELRRNVLHYFTDH 102
           ++E+RR  L YF DH
Sbjct: 12  ANEIRRTFLKYFEDH 26


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 57  GALCMWMRSTRGVC 16
           GALC ++RS + VC
Sbjct: 530 GALCKFLRSIKEVC 543


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 140 ELRRNVLHYFTDHLRKM 90
           +++  VLH++ DHL ++
Sbjct: 279 QMQDQVLHFYADHLTEL 295


>SPAC637.06 |||alpha-1,2-galactosyltransferase
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 6  RSSDTRRAYFSSTYTMR 56
          +  DTRR YF+ T+  R
Sbjct: 31 KEGDTRRKYFTKTHLHR 47


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 152 PRSRYLRARPRTGRQTLHATTP 217
           PR+ YL+  P+T  ++L   TP
Sbjct: 91  PRNDYLQVTPKTVDKSLLGPTP 112


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 2   STIERHTPRVLLIHIHNAPRYATVMRRTL 88
           S+  RHTP+         PR ++  RRTL
Sbjct: 95  SSERRHTPQTNSQKSQKTPRLSSNKRRTL 123


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 176 GRAGSETAACSSELRRNVLHYFTDHLRK 93
           G + S + +C S   R  L YF   LRK
Sbjct: 53  GSSSSGSKSCGSPFTRIWLEYFEVSLRK 80


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 171 APVLAPAGRRCTRQRQQK 224
           +PVL+P  RR  R+R ++
Sbjct: 48  SPVLSPRRRRMNRRRNER 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 793,496
Number of Sequences: 5004
Number of extensions: 10960
Number of successful extensions: 30
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 55
effective length of database: 2,087,258
effective search space used: 41745160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)