Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29i11
         (229 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0424 + 28841562-28841569,28841636-28841714,28841826-288418...    28   1.2  
07_01_0684 - 5161218-5161427,5161509-5161616,5162217-5162390,516...    26   3.7  
03_05_1043 - 29898829-29898930,29899174-29899234,29899638-298997...    26   4.9  
05_03_0373 - 13194723-13195847,13196219-13196809                       25   6.5  
02_01_0327 - 2241228-2242509,2243227-2243247,2243299-2243614,224...    25   6.5  
07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,411...    25   8.6  
01_05_0627 + 23802235-23802853,23803357-23803430,23804207-238043...    25   8.6  

>02_05_0424 +
           28841562-28841569,28841636-28841714,28841826-28841894,
           28841965-28842054,28842132-28842270,28842523-28842625,
           28842708-28842760,28842849-28842915,28843087-28843195,
           28843588-28843653,28843740-28843808,28843893-28843959,
           28844038-28844154,28844433-28844656,28845083-28845094
          Length = 423

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 47  HNAPR-YATVMRRTLTFSSSDQ*NNVKHCVVTRSSKPRSRYLRARPRTGRQTLH 205
           H  PR Y+T    TL+ +      ++K   ++++  P  R+ R+ P TGR T+H
Sbjct: 315 HGMPRRYST---GTLSTTKPHSNASLKSSGLSKTGHPVLRHSRSLPETGRATMH 365


>07_01_0684 -
           5161218-5161427,5161509-5161616,5162217-5162390,
           5162515-5162643,5162722-5163009,5163114-5163346,
           5164235-5165060
          Length = 655

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = -1

Query: 208 RVQRLPAGARTGAQV---ARPRLARASYD 131
           R   LP G   G+ V   ARPR AR  YD
Sbjct: 167 RTVELPCGLAVGSHVTVVARPRAARPEYD 195


>03_05_1043 -
           29898829-29898930,29899174-29899234,29899638-29899744,
           29899839-29899943,29900184-29900270,29900553-29900633,
           29900834-29900906,29901120-29901232,29901781-29901874,
           29902032-29902087,29902171-29902254,29902550-29902642,
           29902751-29902924,29903033-29903146,29903404-29903490
          Length = 476

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 190 AGARTGAQVARPRLARASYDA 128
           A AR G  +ARP  ARAS DA
Sbjct: 13  AAARCGTSLARPWPARASEDA 33


>05_03_0373 - 13194723-13195847,13196219-13196809
          Length = 571

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 14  RHTPRVLLIHIHNAPRYATVMRRTLTFSSSDQ 109
           R +PRV  +H+H AP    V    L   ++D+
Sbjct: 153 RASPRVAAVHVHGAPAGVDVKVMDLQVYATDR 184


>02_01_0327 -
           2241228-2242509,2243227-2243247,2243299-2243614,
           2244232-2244496,2245887-2245985
          Length = 660

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 131 VVTRSSKPRSRYLRARPR-TGRQTLH 205
           VVTR ++ RS + R RPR    +TLH
Sbjct: 632 VVTREARRRSSWRRGRPRKDDDETLH 657


>07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,
            4110567-4110621,4111046-4111143,4112259-4112417,
            4112518-4112577,4113436-4113624,4113749-4113802,
            4113959-4114045,4114149-4114881,4115282-4115373,
            4115739-4115812,4116097-4116199,4116342-4117204,
            4117649-4117724,4117861-4117972,4118092-4118168,
            4118272-4118352,4118710-4118789,4118860-4118875
          Length = 1059

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 128  CVVTRSSKPRSRYLRARPRTGRQTLHATTPTKKK 229
            C+V  SS P S+  R RP+  +  + A    K++
Sbjct: 1010 CLVAMSSLPHSKIYRMRPQILQAAIKALDDKKRR 1043


>01_05_0627 +
           23802235-23802853,23803357-23803430,23804207-23804364,
           23804640-23804964
          Length = 391

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 77  RRTLTFSSSDQ*NNVKHCVVTRSSKPRSRYLRAR 178
           RRT T  S+++ ++VK    T SS+P   + R+R
Sbjct: 49  RRTSTACSAERLSHVKSSTRTSSSRPAPWWRRSR 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,513,597
Number of Sequences: 37544
Number of extensions: 77326
Number of successful extensions: 243
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 268085412
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)