Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29i11
         (229 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    19   5.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    19   7.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    19   7.8  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = +1

Query: 19  HAARTSHPHTQ 51
           H   T HPH Q
Sbjct: 170 HQMHTQHPHMQ 180


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.0 bits (37), Expect = 7.8
 Identities = 7/37 (18%), Positives = 20/37 (54%)
 Frame = +2

Query: 62  YATVMRRTLTFSSSDQ*NNVKHCVVTRSSKPRSRYLR 172
           +   +R+ L+++  ++    K C++ +  + R +Y R
Sbjct: 134 FKRTVRKDLSYACREE----KSCIIDKRQRNRCQYCR 166


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.0 bits (37), Expect = 7.8
 Identities = 7/37 (18%), Positives = 20/37 (54%)
 Frame = +2

Query: 62  YATVMRRTLTFSSSDQ*NNVKHCVVTRSSKPRSRYLR 172
           +   +R+ L+++  ++    K C++ +  + R +Y R
Sbjct: 134 FKRTVRKDLSYACREE----KSCIIDKRQRNRCQYCR 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,550
Number of Sequences: 438
Number of extensions: 808
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3659655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)