Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29i08
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 28 0.70
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 28 0.92
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 1.6
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 2.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.1
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce... 26 2.8
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 3.7
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 25 4.9
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 25 4.9
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.5
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 25 8.6
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom... 25 8.6
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 28.3 bits (60), Expect = 0.70
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +2
Query: 212 DLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQNFLN 367
+LK++L IN +K + + +++KSLTKN E++ R + R +++
Sbjct: 638 ELKAQLNAINTLIKKAELVADQ-KQLKSLTKNHQEIEKAIHRKERQRDQYMS 688
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.9 bits (59), Expect = 0.92
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +2
Query: 197 SQSQRDL----KSKLEEINRHKQKITIDSQHFE----KIKSLTKNVNELQNMEKRVMKSR 352
S+ RDL +S L + +K+K+++ S + K+ SLTK VNEL +V +
Sbjct: 1195 SKKHRDLTFNHESLLRQSASYKEKLSLASSENKDLSNKVSSLTKQVNELSPKASKVPELE 1254
Query: 353 QNFLN 367
+ N
Sbjct: 1255 RKITN 1259
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.1 bits (57), Expect = 1.6
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +2
Query: 218 KSKLEEINRHKQ---KITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQN 358
++KLEE + K+ + +++ K+ L VNEL+ +EK + KS ++
Sbjct: 839 RTKLEETSFKKKIDDAVLANNEQKLKLTKLNFQVNELEQLEKDINKSSED 888
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 26.6 bits (56), Expect = 2.1
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Frame = +2
Query: 224 KLEEINRHKQKITIDSQHFEKIKSLTKNVNE-------LQNMEKRVMKSRQNFLN 367
+ +++NR +I I H EK+K KN N LQ K++ K R N LN
Sbjct: 443 RCDQLNR---EIDILQNHVEKLKMSLKNTNSDITGEDVLQQKLKQLAKDRGNLLN 494
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 2.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 212 DLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMK 346
DL+SKL ++ + + + S K SL N+L+ +EK V K
Sbjct: 1043 DLQSKLSVVSSEYENLLLISSQTNK--SLEDKTNQLKYIEKNVQK 1085
>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/58 (20%), Positives = 29/58 (50%)
Frame = +2
Query: 152 SSVYFFKMFSKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQN 325
+ + F K F++N ++ R ++ + H+Q++ + E+ L+ + +LQN
Sbjct: 103 TEIEFVKAFNENRIKFKAIRAMEDSIAPSRAHRQRLISSIEREEERDPLSPKLTDLQN 160
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.8 bits (54), Expect = 3.7
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 209 RDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRV 340
R K KLEEIN K KI + + S TKN+ +++ K++
Sbjct: 7 RSQKRKLEEINNQK-KIKTKKKATGQQTSNTKNLRDVKKKGKQL 49
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 248 KQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQNF 361
K K ID + + K+ K ++ MEK + K R+NF
Sbjct: 422 KIKKPIDMEEYSKVSG--KVFRPVEEMEKELQKIRENF 457
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 167 FKMFSKNYNASQSQRDLKSKLEEINRHKQ 253
+KM S+N SQSQ++ KS+L N H++
Sbjct: 393 YKMKSRNLLYSQSQKESKSRL--FNGHEE 419
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 6.5
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = +2
Query: 155 SVYFFKMFSKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEK 334
S++ F F ++ + + + ++S + + +IT+DSQ KIK L + LQ +
Sbjct: 327 SLFRFPFF-RSISGKKKEEPMESGTDSLESSTAQITVDSQ--LKIKQLETQIATLQKQLE 383
Query: 335 RVMKS 349
+ S
Sbjct: 384 QFQTS 388
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 200 QSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNE 316
Q DL+ + + + +++ D+Q EK SL KN+ E
Sbjct: 16 QRFHDLQVESQRTDEKLERLLSDAQPTEKFNSLIKNMAE 54
>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 171
Score = 24.6 bits (51), Expect = 8.6
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 346 LHNSFFHILQLVYVFCETFNFFKMLA 269
+H S F + + FC N FKM++
Sbjct: 9 VHESAFSLTHKTFAFCNCNNRFKMMS 34
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,807,200
Number of Sequences: 5004
Number of extensions: 34066
Number of successful extensions: 120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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