Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29i08
(506 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 29 2.1
04_04_1379 + 33113374-33113529,33114046-33114143,33114811-331148... 29 2.1
04_01_0308 + 4188726-4190351 29 2.1
04_01_0283 + 3768732-3768792,3769235-3769876,3769907-3770076,377... 29 2.1
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 29 2.1
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384... 29 2.8
08_02_1250 - 25586442-25587023,25587141-25587827,25588389-25589492 28 3.7
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 27 6.5
05_07_0253 + 28692309-28692643,28693530-28693569,28693709-286937... 27 8.7
>05_05_0348 + 24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/55 (23%), Positives = 31/55 (56%)
Frame = +2
Query: 203 SQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQNFLN 367
+++ L +INRHK +IT + +K LTK + E + +++++ ++ ++
Sbjct: 917 NRQQLDKTSSDINRHKVRITTCE---KLVKKLTKGIEESRKEKEKLLAEKEKMMS 968
>04_04_1379 +
33113374-33113529,33114046-33114143,33114811-33114880,
33116668-33116800,33116981-33118940,33119016-33119076,
33119554-33120057
Length = 993
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 200 QSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMK 346
Q Q D++S+ + N K QH E +K +TK E Q + V K
Sbjct: 288 QKQLDIRSEERKFNL-KSADAAHKQHLENVKKITKLEAECQRLRSMVRK 335
>04_01_0308 + 4188726-4190351
Length = 541
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 179 SKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMK 346
++N ++ DLK KLEEI +K + ++ + T+ N L E + +K
Sbjct: 170 AQNEEITKKLEDLKRKLEEIQTNKDLVEGETNELQPEVFATEEKNSLSEAEIKCLK 225
>04_01_0283 +
3768732-3768792,3769235-3769876,3769907-3770076,
3770134-3770511,3770602-3770991
Length = 546
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = +2
Query: 179 SKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQ 355
++N ++ DLK+KLEEI +K ++S++ EK + L+ + V+++++
Sbjct: 204 TQNEEITKDLEDLKTKLEEIKTNKD--LVESENEEKYSQSEAEIKYLKQVMGAVVEAKE 260
>03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 29.1 bits (62), Expect = 2.1
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 143 CFTSSVYFFKMFSKNYNASQSQRDLKSKLEEI-NRH-KQKITIDSQHFEKIKSLTKNVNE 316
C T K+ S + S ++ L S+LE I H +Q+ I+ HF K + E
Sbjct: 914 CKTVEFLEAKLSSLQKDISSKEQSLLSELESIFQEHTEQEEKINRAHFMLNKIEKEKTLE 973
Query: 317 LQNMEKRVM 343
++N+E+ VM
Sbjct: 974 VENLEREVM 982
>03_06_0670 +
35434203-35434355,35436601-35436729,35436978-35438409,
35438524-35439014
Length = 734
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +2
Query: 203 SQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQNFLNYGINN 382
++ D KS E + K+K D +K K + QN K K R+N +NY ++N
Sbjct: 475 AKEDKKSDRHEKKKRKEK---DKHKEKKRDKEAKKEKDEQNNNKEHDKLRENSINYQVDN 531
>08_02_1250 - 25586442-25587023,25587141-25587827,25588389-25589492
Length = 790
Score = 28.3 bits (60), Expect = 3.7
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 200 QSQRDLKSKLEEINRHKQKITIDSQHF-EKIKSLTKNVNELQNMEKRVMKSRQNFLNYG 373
Q D + L+EI+ K I D F +K+ + K EL+ EKRV + +NF G
Sbjct: 587 QQTSDARISLQEISSRKAVIQQDIATFKQKLSFIDKRGPELE-AEKRVAAAARNFKEAG 644
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +2
Query: 299 TKNVNELQNMEKRVMKSRQNFLNYGINNF*IKYIIYVTK*SFIIIF 436
T + + + + + ++ SR+N L YG + +IY T+ ++IF
Sbjct: 319 TNSASSIDDSREGLVGSRRNILRYGSLGIAVSCLIYTTRNWKLVIF 364
>05_07_0253 +
28692309-28692643,28693530-28693569,28693709-28693777,
28694219-28694273,28694796-28694871,28695565-28695702,
28697361-28697388,28698177-28698413,28698516-28698665,
28698726-28698734
Length = 378
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = -2
Query: 238 NFFQFRF*ISLRLRCVVIL*EHLEKIYR*SKTASFYPN*ELIIIHXYRDHLLVHSFHKIV 59
N FRF LR++ + +++IYR A+FY EL + LL+HS ++V
Sbjct: 269 NLSSFRFAGDLRVQVSLGETVQIKQIYRLCNDAAFYARTELPSSMPNLERLLIHSDTEMV 328
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,458,133
Number of Sequences: 37544
Number of extensions: 148722
Number of successful extensions: 416
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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