Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29i08
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    32   0.27 
U23486-4|AAC46776.2|  261|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z70284-14|CAA94285.4|  422|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AL031634-1|CAA21034.1|  256|Caenorhabditis elegans Hypothetical ...    28   3.4  
U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z75550-4|CAA99923.2|  335|Caenorhabditis elegans Hypothetical pr...    27   5.9  
U97189-9|AAC48161.1|  263|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z70306-2|CAA94323.2|  785|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF000417-1|AAC39118.1|  785|Caenorhabditis elegans high-affinity...    27   7.8  

>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 13/53 (24%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
 Frame = +2

Query: 200  QSQRDLKSKLEEINRHKQKITIDSQHF-EKIKSLTKNVNELQNMEKRVMKSRQ 355
            ++ RDL+ +LE+  + +QK+ +D  +  +++++L + + ELQ+   +++K ++
Sbjct: 949  ETVRDLEEQLEQEEQARQKLLLDKTNVDQRLRNLEERLVELQDAYDKLLKEKR 1001


>U23486-4|AAC46776.2|  261|Caenorhabditis elegans Hypothetical
           protein F07F6.2 protein.
          Length = 261

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/64 (21%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = +2

Query: 173 MFSKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFE-KIKSLTKNVNEL-QNMEKRVMK 346
           M  ++++  ++  D+K+K+E+    ++ +  + Q +  +I+ + +    L Q +E++  K
Sbjct: 181 MIEEDWHVKEANEDVKNKIEQEGLKRKDMEFEEQLYHLRIEKVKRREQVLKQKLEEKKAK 240

Query: 347 SRQN 358
            RQN
Sbjct: 241 RRQN 244


>AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical
           protein R06B10.1 protein.
          Length = 1236

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +2

Query: 173 MFSKN--YNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMK 346
           +FS N   N      DLKS    + +   K+T+D++  + +K L     EL+ M   + K
Sbjct: 649 IFSMNEALNMKLDVNDLKSLCSTVQKEMSKVTLDAKDQQNLKRLATLSAELETMATSLNK 708


>Z70284-14|CAA94285.4|  422|Caenorhabditis elegans Hypothetical
           protein K07F5.14 protein.
          Length = 422

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +2

Query: 182 KNYNASQSQRDLKSKLEEINRHKQKITIDSQHF------EKIKSLTKNVNELQNMEKRVM 343
           K    +QS+ +    +++I +   K+ + ++ F      EKIKSL  N    Q +EK + 
Sbjct: 314 KKIEPTQSKAEPSGNVDKIEKSLLKVKVSTKFFVDPLSDEKIKSLAANFRRTQTVEKVID 373

Query: 344 K 346
           K
Sbjct: 374 K 374


>Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical
           protein R186.2a protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/79 (21%), Positives = 35/79 (44%)
 Frame = -3

Query: 486 KLYFVIYNVFYXXXXXXXXXXXLYFVTYIMYFI*KLFIP*LRKFCLDFITLFSIFCSSFT 307
           K+Y VI  + Y              + +I++F          KF L   +L  +F +S  
Sbjct: 14  KIYEVINEIVYPIFLTITLIFHSVLLVFIIFFSPSHLN--FLKFLLLTTSLLDVFATSIL 71

Query: 306 FFVRLLIFSKCWLSIVIFC 250
           F+++  I S+  +++ ++C
Sbjct: 72  FYIQPRILSEYQVNVPVYC 90


>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
           protein T16G12.1 protein.
          Length = 1890

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 451 KKTCIKNNNKTLFCNIYNVFYLKIIYSVIKKILS*LHNSFFHIL 320
           K  CI + N T +CN Y+    K IY    K      + FF +L
Sbjct: 795 KSACINSLNGTAWCNPYSTNLRKAIYCGAAKYAPATSDYFFQML 838


>AL031634-1|CAA21034.1|  256|Caenorhabditis elegans Hypothetical
           protein Y32B12C.1 protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 161 YFFKMFSKNYNASQSQ-RDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNE 316
           + F  + KN   ++ +  D K  LEEI R   ++ +  +   K+K+  K   E
Sbjct: 77  FLFCYYKKNIEDTRGRLEDDKETLEEIQRTHDELNVKFEELNKVKTFIKKQKE 129


>U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical
           protein F33G12.5 protein.
          Length = 928

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/52 (21%), Positives = 32/52 (61%)
 Frame = +2

Query: 194 ASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKS 349
           A + ++DL+SK E++   + K+  ++++ +  + L +++   + +EKR  ++
Sbjct: 664 AEEERKDLESKQEQLELKETKVPEEAENQQSSRELHEDLWARKELEKRFARA 715


>Z75550-4|CAA99923.2|  335|Caenorhabditis elegans Hypothetical
           protein T22C1.6 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 218 KSKLEEINRHKQKITIDSQHF-EKIKSLTKNVNELQNMEKRVMKSRQ 355
           K K +E N+    +T+ +Q + EKI +  K +  L+N+ + + K  Q
Sbjct: 277 KKKSDEANKKVLVLTMTNQEYAEKIATSDKKIQMLENLCRALRKGEQ 323


>U97189-9|AAC48161.1|  263|Caenorhabditis elegans Hypothetical
           protein C48B6.9 protein.
          Length = 263

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/30 (33%), Positives = 22/30 (73%)
 Frame = -3

Query: 309 TFFVRLLIFSKCWLSIVIFCLCLLISSNLD 220
           T F+R++ FS  + SI++F + L+++ ++D
Sbjct: 180 TSFLRIVAFSFWFASIIVFVIVLMLTVSID 209


>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
           protein T06E4.1 protein.
          Length = 1295

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 155 SVYFFKMFSKNYNASQSQRDLKSKLEEI-NRHKQK-ITIDSQHFEKIKSLTKNVNE 316
           S+Y F+M  KN    +  +DL+ K+E +  +H+Q  + I      + K L + V E
Sbjct: 217 SLYEFEMLEKNIEHDEVVKDLQLKIELLGEKHRQTLVEIKEAREVEEKMLMQQVEE 272


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 242 RHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQNFL 364
           +HKQ+  I S      + L KN  +L  +EK +  +  N+L
Sbjct: 254 KHKQRQLIGSIESHCFEELIKNCEDLDYVEKLLFMAHTNYL 294


>Z70306-2|CAA94323.2|  785|Caenorhabditis elegans Hypothetical
           protein C06G8.2 protein.
          Length = 785

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 301 CETFNFFKMLAVNSYFLFMSINFFQ 227
           CE F+F+ M AV + + F  +NF Q
Sbjct: 43  CERFSFYGMRAVLTLYFFNILNFSQ 67


>AF000417-1|AAC39118.1|  785|Caenorhabditis elegans high-affinity
           peptide transporter protein.
          Length = 785

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 301 CETFNFFKMLAVNSYFLFMSINFFQ 227
           CE F+F+ M AV + + F  +NF Q
Sbjct: 43  CERFSFYGMRAVLTLYFFNILNFSQ 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,829,212
Number of Sequences: 27780
Number of extensions: 189130
Number of successful extensions: 783
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)