Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29i03
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    27   2.5  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   3.3  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   4.4  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   4.4  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   7.7  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    25   7.7  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   7.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   7.7  

>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = +1

Query: 148 VAFCALRFVSVLVEVLCF 201
           + FC++ FV++++ +LCF
Sbjct: 468 IGFCSVSFVALMIPILCF 485


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 446 TKDSKQPSKARQKKFQRHFPQVGPEEK 526
           TKD+  P+  + K ++R+     PEEK
Sbjct: 336 TKDACMPNYTKLKAYERNMTDASPEEK 362


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 309  DALSTILHFEHDNHILCTCFF 247
            D LS I +   D +ILC+CF+
Sbjct: 2420 DKLSRIYNENSDENILCSCFY 2440


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 112 EKPATSELLPKRLYKQFNFIKCITTRRRGPY 20
           E+P TS+LLP RL K ++    +TT+    Y
Sbjct: 275 EQPLTSDLLPSRLPKTWDQRLYLTTKTTEGY 305


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 495 LWNFFCRALLGCLLSFVSS--FPDTEPSADT 409
           LW  F   LL CL+S ++S     T+ SA+T
Sbjct: 162 LWQRFSSLLLNCLVSSINSHRIEGTDTSAET 192


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 431 SGNDETKDSKQPSKARQKKFQRHFPQ 508
           SGN+E K+ +Q      KK     PQ
Sbjct: 13  SGNEEVKEKRQKPLKNDKKIAEELPQ 38


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 332 RNRQSVQMMRYQPYYTLNMTITYYALVFLI 243
           RNRQ +++ +   YY L  +I    L  LI
Sbjct: 57  RNRQPIRLQKIFQYYNLTFSIASAILALLI 86


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +2

Query: 299 DNASFEHSDDSGASNTAIRDLNGQAVKPLSGSAPSVRVSALGSVSGNDETKDSKQPSK 472
           D A+   SD++ AS    +  NG  + PL  +     + A G   G+    D K P +
Sbjct: 95  DPAAILKSDEASASIATYKSENGSILGPLDFNRLQPNLLASGDNKGDVWVWDIKHPQQ 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,356
Number of Sequences: 5004
Number of extensions: 59309
Number of successful extensions: 198
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)