Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29i03
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.51 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    25   0.67 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.67 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.67 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.7  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   6.3  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   8.3  

>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -2

Query: 268 HIMHLFF*YYIEPVRYSEFRYIQNTTLQQA----QTRILGHKTQHTIFHI 131
           HI    F Y +  +RY     +Q+  +       Q R+LGH+ +H+  H+
Sbjct: 153 HIEIESFGYTMRDIRYKWNAGLQSVGISNEVELPQFRVLGHRQRHSTIHL 202


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 378 SLYQDQLRQSACRHWALYP 434
           +L ++++RQ A  HW ++P
Sbjct: 65  ALMKERIRQKAAGHWVIHP 83


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 378 SLYQDQLRQSACRHWALYP 434
           +L ++++RQ A  HW ++P
Sbjct: 65  ALMKERIRQKAAGHWVIHP 83


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 378 SLYQDQLRQSACRHWALYP 434
           +L ++++RQ A  HW ++P
Sbjct: 65  ALMKERIRQKAAGHWVIHP 83


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 162 GTKRNTQYSTSLIFLHTRNQQRANCCLN-DYTNNSIL 55
           G   NTQ +  L+ L  RNQ   N  LN ++ N  IL
Sbjct: 365 GRVNNTQRNEYLLALSDRNQNVLNNDLNLEHVNFQIL 401


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 386 IKALRPVHLGRE*QYCLHRNRQSVQM 309
           +K    +H G +  +C H +RQ VQ+
Sbjct: 25  LKTHMRLHTGEKPYHCSHCDRQFVQV 50


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 95  ARCWFLVCRNINDV 136
           AR W + CRNI  V
Sbjct: 116 ARFWLMDCRNIGAV 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,234
Number of Sequences: 438
Number of extensions: 4125
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)