Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29h24
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   1.8  
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ...    26   3.1  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    26   4.1  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   7.2  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.5  

>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 107 PAFTRSRFIPRTVTYVRQERGRP 39
           PAFT +RF P   T V  ER  P
Sbjct: 334 PAFTANRFSPAAPTTVSSERNAP 356


>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +1

Query: 193 STQKVRTKHSYILP*SELISHRVRENLNKQLLQR 294
           S +K    H +++P  E++S    + + KQ+L +
Sbjct: 192 SPRKSHIDHDFVIPEDEMLSEEEEQEVEKQILPK 225


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -3

Query: 199 EWRKRECSCTYVQGRHPNARQPNVRTVVNAYQRLLDHGSFHARSPTYVKNEEDRRCHK 26
           E R ++  C Y+Q    + R+ NVRT  NA  R            ++++ EE RR  +
Sbjct: 261 ERRLKQKQCDYLQTVCAHGREINVRT-KNAQARAQKANRAVLAYHSHIEKEEQRRAER 317


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 169 TYSCTRVFSTQKVRTKHSYI 228
           +Y  T  FS   ++TKH YI
Sbjct: 106 SYGLTPFFSISSIKTKHDYI 125


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 454 FGYLRGAAPLINSGKRKSKPTNH 386
           +GY  G+APLI+   ++  P +H
Sbjct: 418 YGYSIGSAPLISLSSKQLHPRHH 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,102,947
Number of Sequences: 5004
Number of extensions: 39440
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)