Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29h24
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21321-6|AAG00046.1|  206|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical ...    29   1.6  
U28971-1|AAA68376.2|  551|Caenorhabditis elegans Egg sterile (un...    29   2.9  
AL022289-2|CAA18374.1|  478|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z70312-7|CAH04716.1|  263|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z70311-13|CAA94375.2|  263|Caenorhabditis elegans Hypothetical p...    27   6.6  
Z70311-7|CAH04719.1|  154|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AF016447-3|AAG24018.1|  349|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U21321-6|AAG00046.1|  206|Caenorhabditis elegans Hypothetical
           protein ZK177.3 protein.
          Length = 206

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 338 KTVLNCYRKCAHAFFRCNSCLFKFSLTRWLISSDHG 231
           K + +   +C H +FRC  C FK +    L S  HG
Sbjct: 23  KLITHVDLECKHKYFRCELCDFKSTQKTGLTSHYHG 58


>Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical
           protein T07D10.4 protein.
          Length = 413

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 391 WWASTCVSRNLSMEQRPVGTQTPPHVPT 474
           W+++ CV  N  + +RP G Q P   PT
Sbjct: 263 WYSNNCVDNNKYVCKRPAGVQCPAVPPT 290


>AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical
           protein H16D19.1 protein.
          Length = 413

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 391 WWASTCVSRNLSMEQRPVGTQTPPHVPT 474
           W+++ CV  N  + +RP G Q P   PT
Sbjct: 263 WYSNNCVDNNKYVCKRPAGVQCPAVPPT 290


>U28971-1|AAA68376.2|  551|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein1 protein.
          Length = 551

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -2

Query: 140 TAKCANRGKCLPAFTR 93
           T KCA   KCLPAFTR
Sbjct: 462 TIKCAADKKCLPAFTR 477


>AL022289-2|CAA18374.1|  478|Caenorhabditis elegans Hypothetical
           protein ZK1225.2 protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 158 KTPKRSTAKCANRGKCLPAFTR-SRFI 81
           K P   T++C  RG  LP+FTR SR++
Sbjct: 346 KMPGHFTSQCIRRGISLPSFTRFSRWV 372


>Z70312-7|CAH04716.1|  263|Caenorhabditis elegans Hypothetical
           protein T25B9.3a protein.
          Length = 263

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 106 QRLLDHGSFHARSPTYVKNEEDRRCHKICTTMY*R 2
           Q+++ H SFH       K  EDR+C  IC   Y R
Sbjct: 181 QQVIQHASFHFDLSKLPK--EDRKCSTICVFPYLR 213


>Z70311-13|CAA94375.2|  263|Caenorhabditis elegans Hypothetical
           protein T25B9.3a protein.
          Length = 263

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 106 QRLLDHGSFHARSPTYVKNEEDRRCHKICTTMY*R 2
           Q+++ H SFH       K  EDR+C  IC   Y R
Sbjct: 181 QQVIQHASFHFDLSKLPK--EDRKCSTICVFPYLR 213


>Z70311-7|CAH04719.1|  154|Caenorhabditis elegans Hypothetical
           protein T25B9.3b protein.
          Length = 154

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 106 QRLLDHGSFHARSPTYVKNEEDRRCHKICTTMY*R 2
           Q+++ H SFH       K  EDR+C  IC   Y R
Sbjct: 72  QQVIQHASFHFDLSKLPK--EDRKCSTICVFPYLR 104


>AF016447-3|AAG24018.1|  349|Caenorhabditis elegans Hypothetical
           protein C54F6.8 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 338 KTVLNCYRKCAHAFFRCNSCLFK 270
           K + NCY       F+C SC FK
Sbjct: 55  KKINNCYETSKGTRFKCRSCRFK 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,791,599
Number of Sequences: 27780
Number of extensions: 227124
Number of successful extensions: 657
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)