Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29h23
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    29   0.71 
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    29   0.71 
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    27   1.6  
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    27   2.2  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    26   3.8  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    26   5.0  
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    25   6.6  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   6.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   8.7  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   8.7  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    25   8.7  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    25   8.7  

>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 220 FYSRNRWVEYSDKYYLNYDGSQVPAEW 300
           F  +  WV Y+D   LNYDGS     W
Sbjct: 139 FEKKAAWVLYADIICLNYDGSAFDYAW 165


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +1

Query: 121 ASLYKLYRQDDVKDGVLVGEDKYGNKYYENPRFFYSRNRWVEYSDKYYLNYDGSQVP-AE 297
           +S+  L +   VKD  +   D  G+   +N +   S N    Y +K+   YD   +P + 
Sbjct: 47  SSMLHLSKGLTVKDVRIFFHDSIGSTLLKNRKKLNSENELPNYGEKFTHKYDNQDMPDSV 106

Query: 298 WFGWLHYKTDLPP 336
           W   ++  T   P
Sbjct: 107 WLAKVNGMTKSDP 119


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 4   LYGSCTPLVISTKMSLGKFLALDKLSN--FFNVIRQNGGIRASLYKLYR 144
           L G  + LV+     L ++L  +K  N  FF ++  +  I  SLY LYR
Sbjct: 165 LEGMASLLVVQALGHLSRWLVHNKSENWMFFILLNASSAISMSLYLLYR 213


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 371 WRTTPKIFLARPLNMCRTVRPDPKWKP 451
           W+   K F  RP      ++P P WKP
Sbjct: 11  WKFGQKRFYYRPWIRIENIKPTPLWKP 37


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 342 GSESSPLQVDGGP-HRKSFWHDRSICAVQYDPTQSGSLGAETQRQ 473
           G +S P+ V G    R   W + S+C    D + +G    ET+++
Sbjct: 594 GDDSKPIIVGGAAVFRTILWEEESVCINMNDYSVTGVCIEETEKR 638


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +1

Query: 181 DKYGNKYYENPRFFYSRNRWVEYSDKYYLNYDGSQVPAE 297
           DKY    Y      YS N W+++  K+    +  + P +
Sbjct: 565 DKYNKDIYIGSTVCYSPNEWLDFFSKFQQPREALKFPED 603


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 178 EDKYGNKYYENPRFFYSRNRWVEYSDKY 261
           E +Y + Y  N R FYS + ++EY D +
Sbjct: 90  ETEYASSY-ANTREFYSADEYLEYLDSH 116


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 419 RTVRPDPKWKPGSRNAKTVFKNK 487
           R+VR  PK+KPG+R + T  +N+
Sbjct: 110 RSVRSKPKYKPGTRRS-TRLRNR 131


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 154 VKDGVLVGEDKYGNKYYENPRFFYSRNRWVEYSDKYY 264
           V  G+++   +  +K  ENP F+Y R    EY D +Y
Sbjct: 357 VSYGLMMNLVRDFSKNLENPNFYYER----EYVDSFY 389


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/56 (21%), Positives = 26/56 (46%)
 Frame = +1

Query: 364 KWMADHTENLSGTTAQYVPYSTTRPKVEAWEPKRKDSL*K*IRAKNHLVEHLFFFV 531
           KW +  + ++    A Y+P+      +EA+     +S     + K +L   +F+F+
Sbjct: 355 KWASPDSSSILSWYAMYIPFMAANGVLEAFYVSAANSSQLYDQGKCYLASAVFYFI 410


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +1

Query: 250 SDKYYLNYDGSQVPAEWFGWLHYKTDLPPHQDPSRPHYKWMADHTENLSGTTAQ-YVPYS 426
           S+ + +N +G +V    + W   + D   H D  +     +  H E L   T + Y  Y 
Sbjct: 302 SNTFVVNNEGKRVRGRRYPWGVVEVDNEEHSDFPKLREMLIRTHLEELKEQTNKLYEAYR 361

Query: 427 TTR 435
           T R
Sbjct: 362 TER 364


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 235 RWVEYSDKYYLNYDGSQVPAEWFGWLHYKTD 327
           +WV+YS+KY L Y   Q+  E  G +H+  D
Sbjct: 496 KWVDYSNKYGLGY---QLSDESVG-VHFNDD 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,180
Number of Sequences: 5004
Number of extensions: 65057
Number of successful extensions: 197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)