Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29h23
         (616 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           24   3.4  
AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform ...    23   5.9  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    23   5.9  
AF026494-1|AAB81852.1|  113|Anopheles gambiae chitinase protein.       23   7.8  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 265  SNTCPSTRPICSCCKRNVGSH 203
            S T  ST P+C  C+++  SH
Sbjct: 1173 SPTVNSTEPVCVKCRKSGNSH 1193


>AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform B
           protein.
          Length = 755

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 376 PPSTCSGDDSDPDAEANRFCS 314
           P   C+GD+  PD   N  C+
Sbjct: 591 PEQFCNGDNRPPDCGPNCMCT 611


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 418 PYSTTRPKVEAWEPKR 465
           PY  T+P+V  W P+R
Sbjct: 300 PYYQTKPQVYWWTPER 315


>AF026494-1|AAB81852.1|  113|Anopheles gambiae chitinase protein.
          Length = 113

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 181 DKYGNKYYENPRFFYSRNRWVEYSDKYYLNYDGSQVPAEW 300
           D  G+KY    R   +R R++E   K+   Y+   +  +W
Sbjct: 74  DSAGDKYSRLVRSSQARKRFIENVMKFIDKYNFDGLDLDW 113


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,106
Number of Sequences: 2352
Number of extensions: 16663
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60132501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)