Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29h21
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   0.68 
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   2.1  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   4.8  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   6.3  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   6.3  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    24   8.4  
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    24   8.4  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    24   8.4  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    24   8.4  

>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 27.9 bits (59), Expect = 0.68
 Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
 Frame = +1

Query: 13  NPIGNKVI-VPFAHEINDTGLYEYDVLAYVDSVEFDGKQFEEFVQKLILPSSFNDSEKVL 189
           N I +KVI V +A+     GL+++ + A+   +EF  ++ +  +Q+L+   +FN+S  ++
Sbjct: 472 NDIIDKVICVSYANN-TILGLFDFGLCAFTQEIEFSNEKEKSPIQQLL---TFNNSNMIV 527


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +1

Query: 154  LPSSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFN 282
            LP S N +   ++Y     N+  +++A      + W+ S  FN
Sbjct: 1114 LPPSINSNRNNVFYLNIPGNECYLFEAPSVLAMNEWIHSLNFN 1156


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 10  YNPIGNKVIVPFAHEINDTGLYEYDVLAYVDSV 108
           +NPIGN   +P   +  D  LY Y +  Y  S+
Sbjct: 177 FNPIGNLSDIPGLPQPGDGFLYLYVLFTYFISI 209


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -3

Query: 398 YLIMSN---ITFLLSVLVTLCNLTYN 330
           YL  SN   I+F+++  VTLC  TY+
Sbjct: 514 YLFYSNFIWISFIVAQFVTLCTQTYD 539


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 103 SVEFDGKQFEEFVQKLILPSSFNDSEKVLYYNEASKN 213
           SV  D ++FE  + K+ +   FND+   L + +  +N
Sbjct: 451 SVNNDSEEFETLLAKMNMTPDFNDNLLQLKFTDDVRN 487


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 151 ILPSSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNWK 288
           I PS+F DSE++   N   K     + AL+  +E       KFNW+
Sbjct: 111 INPSNFFDSEQITKINAVKKR----FPALD--SEMIIATLEKFNWR 150


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = +1

Query: 181 KVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNWKIFCNGFIYDKKSKALYVKLHNVTS 360
           + +YY E  K      KA+EF T +++ KS K      C   +  KK+ +L + LH  + 
Sbjct: 177 RYVYYIEILKQFPNYLKAVEFNTGTTFFKSFK------C---LNIKKNSSLILSLHAFSK 227

Query: 361 TLNKNVI 381
             N N +
Sbjct: 228 GRNINPV 234


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 149 NFCTNSSNCLPSNSTLS 99
           NFC++  NCL +  TL+
Sbjct: 394 NFCSSKDNCLTNRLTLN 410


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/46 (21%), Positives = 25/46 (54%)
 Frame = +1

Query: 154 LPSSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNWKI 291
           +P +   ++K+L+YN A++   ++       T++  V+  +F  +I
Sbjct: 579 MPKNLTLADKILFYNRANRTVAILCNHQRSVTKNHDVQMERFAERI 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,962
Number of Sequences: 5004
Number of extensions: 29698
Number of successful extensions: 91
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)