Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29h21
(421 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 31 0.50
12_01_1017 - 10348198-10348326,10348412-10348532,10348746-103492... 29 1.1
11_06_0230 + 21528384-21528908,21529017-21529150,21530109-215301... 29 1.5
11_06_0228 + 21497248-21498143,21499831-21501700,21501934-215020... 29 2.0
11_06_0235 + 21588212-21589029,21589426-21591358 28 2.7
11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687... 28 2.7
11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510 27 4.6
06_03_0823 - 25026949-25027551,25027635-25027742,25027994-250281... 27 6.1
12_02_0537 + 20126176-20127154,20127398-20127624 27 8.1
08_02_1518 + 27644404-27645135 27 8.1
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 30.7 bits (66), Expect = 0.50
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +1
Query: 166 FNDSEKVL---YYNEASKNKNMIYKALEFTTESSWVKSNKFNWKIFCNGFIYDKKSKALY 336
F ++ K+L +Y+ S KN + L E ++ WK GF++ ++ K L+
Sbjct: 394 FQNTRKILSFSFYDMPSYLKNCLLH-LRIFPEDCLIEKESLIWKWIAEGFVHVEQGKGLF 452
Query: 337 -VKLHNVTSTLNKNVILDM 390
V T +NK++I M
Sbjct: 453 EVGERYFTELINKSMIQPM 471
>12_01_1017 -
10348198-10348326,10348412-10348532,10348746-10349275,
10349318-10349433,10349672-10349990,10350019-10350106,
10350194-10350639
Length = 582
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 121 KQFEEFVQKLILPSSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNWKI 291
K+ + + + + S+ND +K L K + Y +E E+ W K+ NW +
Sbjct: 515 KEKIQILDSMRMDKSYNDKDKDLNNTIKGIEKFVQYARIEDGAENKWKKTKIINWPL 571
>11_06_0230 +
21528384-21528908,21529017-21529150,21530109-21530158,
21530194-21530726
Length = 413
Score = 29.1 bits (62), Expect = 1.5
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +1
Query: 100 DSVEFDGKQFEEFVQKLILPSSFNDSEKVLYYNEASKNKN-MIYKALEFTTESSWVKSNK 276
DS+ F E VQ SF+ YY+ S K M+Y L E W++ +
Sbjct: 346 DSIGFGPTDENEVVQNTRKILSFS------YYDMPSHLKTCMLY--LSIYPEDHWIEKDS 397
Query: 277 FNWKIFCNGFIYDKK 321
WK GFI++++
Sbjct: 398 LIWKWIAEGFIHEEQ 412
>11_06_0228 +
21497248-21498143,21499831-21501700,21501934-21502038,
21502139-21502232,21502335-21502363
Length = 997
Score = 28.7 bits (61), Expect = 2.0
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Frame = +1
Query: 34 IVPFAHEINDTGLYEYDVLAYVDSVEFDGKQFEEFVQKLILPSSFNDSEKVLYYNEASKN 213
I+ A + D E+ V+ DS+ F E VQ + SF+ YY+ S
Sbjct: 399 IITIASLLVDKPAREWSVI--YDSISFGTGDQNEAVQNMRKILSFS------YYHLPSYL 450
Query: 214 KN-MIYKALEFTTESSWVKSNKFNWKIFCNGFIYDKKSKALY-VKLHNVTSTLNKNVI 381
K M+Y L E + + WK GF+++++ K L+ V +NK++I
Sbjct: 451 KTCMLY--LSIYPEDHLIYKDILIWKWIAEGFVHEEQDKGLFEVGERYFIELINKSMI 506
>11_06_0235 + 21588212-21589029,21589426-21591358
Length = 916
Score = 28.3 bits (60), Expect = 2.7
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +1
Query: 190 YYNEASKNKNMIYKALEFTTESSWVKSNKFNWKIFCNGFIYDKKSKALY-VKLHNVTSTL 366
YY S K + L E W++ W GF++++ +Y V T +
Sbjct: 413 YYELPSHLKTCLLH-LSIFPEDCWIEKKSLIWIWIAEGFVHEEHGNKIYEVGESYFTELI 471
Query: 367 NKNVILDM 390
NK +I M
Sbjct: 472 NKGMIQPM 479
>11_06_0233 +
21565233-21566053,21566840-21567890,21568075-21568758,
21568927-21569019,21571815-21571835
Length = 889
Score = 28.3 bits (60), Expect = 2.7
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 190 YYNEASKNKNMIYKALEFTTESSWVKSNKFNWKIFCNGFIYDKKSKALY-VKLHNVTSTL 366
YY+ S K + L E S ++ + WK GF+++++ K L+ V +
Sbjct: 418 YYDLPSHLKTCMLH-LSIYPEDSLIEKDGLIWKWVAEGFVHEEQGKTLFEVGERYFMQLI 476
Query: 367 NKNVILDM 390
NK++I M
Sbjct: 477 NKSMIQPM 484
>11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510
Length = 964
Score = 27.5 bits (58), Expect = 4.6
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Frame = +1
Query: 100 DSVEFDGKQFEEFVQKLILPSSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKF 279
DS+ F + E VQ SF+ YY+ S K + L E ++
Sbjct: 388 DSIGFGPEDRNEVVQNTRKILSFS------YYDLPSYLKTCLLH-LSIYPEDHRIEKESL 440
Query: 280 NWKIFCNGFIYDKKSKALY-VKLHNVTSTLNKNVI 381
WK GF+ +++ K L+ V T +NK++I
Sbjct: 441 IWKWIGEGFVQEEQGKGLFEVGERYFTELINKSMI 475
>06_03_0823 -
25026949-25027551,25027635-25027742,25027994-25028107,
25028200-25028309,25028432-25028520,25028637-25028833,
25028961-25029122,25029255-25029373,25029488-25029541,
25029687-25029769,25029894-25029982,25030105-25030257,
25030373-25030465,25032070-25032136,25032238-25032350,
25033466-25033561,25034415-25034594
Length = 809
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 7 EYNPIGNKVIVPFAHEINDTGLY 75
+YN +GN IV F EI + GLY
Sbjct: 92 QYNFVGNYDIVRFFKEIQNAGLY 114
>12_02_0537 + 20126176-20127154,20127398-20127624
Length = 401
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 138 KLFKLFAIKLHTVHVS*DVVLVKSRVVNFVSKRHN 34
+L+K+ A HT+H+S + +V+ S+ HN
Sbjct: 31 RLYKIEAESRHTIHISCSLGPATDAIVSLCSRFHN 65
>08_02_1518 + 27644404-27645135
Length = 243
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 188 KTFSESLNDDGNINFCTNSSNCLPSN 111
+T S L GNI C N CLPS+
Sbjct: 40 ETMSNGLKRIGNIYSCINEIMCLPSS 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,051,934
Number of Sequences: 37544
Number of extensions: 157626
Number of successful extensions: 403
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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