Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc29h21
(421 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 31 0.004
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 31 0.004
DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 26 0.20
AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 23 1.8
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 1.8
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 23 1.8
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 21 4.3
DQ000307-1|AAY21180.1| 423|Apis mellifera major royal jelly pro... 21 4.3
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 21 5.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.5
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.5
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.5
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.5
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 21 7.5
AY588474-1|AAT94401.1| 104|Apis mellifera defensin 2 protein. 20 9.9
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 20 9.9
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 20 9.9
AY217747-1|AAP45005.1| 246|Apis mellifera short-chain dehydroge... 20 9.9
AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein. 20 9.9
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 31.5 bits (68), Expect = 0.004
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +1
Query: 160 SSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNWKIFCNGFIYDKKSKALYV 339
+S+ + + Y E SK ++ E + E+ + SN +N+K + N + SK LY
Sbjct: 270 NSYKNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNYNNNY----NSKKLYY 325
Query: 340 KLHNV 354
+ N+
Sbjct: 326 NIINI 330
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 31.5 bits (68), Expect = 0.004
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +1
Query: 160 SSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNWKIFCNGFIYDKKSKALYV 339
+S+ + + Y E SK ++ E + E+ + SN +N+K + N + SK LY
Sbjct: 281 NSYKNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNYNNNY----NSKKLYY 336
Query: 340 KLHNV 354
+ N+
Sbjct: 337 NIINI 341
>DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex
determiner protein.
Length = 178
Score = 25.8 bits (54), Expect = 0.20
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 163 SFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNWKIFCNGFIYDKKSKALYVK 342
S+ + Y E SK ++ K E + E + S N+K + N Y+ +K LY K
Sbjct: 49 SYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNNYK-YSNYNNYNNYNKKLYYK 107
>AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein
protein.
Length = 411
Score = 22.6 bits (46), Expect = 1.8
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Frame = +1
Query: 157 PSSFNDSEK-VLYYNEASKNKNMIYKA-LEFTTESSWVKSNKFNWKIFCNGFIYDKKSKA 330
PSS D+ V Y+ + ++N + E + + + +FCN D+ +
Sbjct: 300 PSSVIDTNTGVDYFTQINRNGIACWDTNTELNPNTFILVAENNTTMVFCNDLSIDRSTNT 359
Query: 331 LYVKLHNVTSTL 366
+YV N L
Sbjct: 360 MYVLSDNFQQLL 371
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.6 bits (46), Expect = 1.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 185 TFSESLNDDGNINFCTNSSNCLPSNSTLS 99
T + ++D G N C+NS + S S++S
Sbjct: 7 TENAKVSDSGYSNTCSNSQSQRSSGSSIS 35
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 22.6 bits (46), Expect = 1.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 185 TFSESLNDDGNINFCTNSSNCLPSNSTLS 99
T + ++D G N C+NS + S S++S
Sbjct: 7 TENAKVSDSGYSNTCSNSQSQRSSGSSIS 35
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 21.4 bits (43), Expect = 4.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 88 LAYVDSVEFDGKQFEE 135
L YVD+ +F Q+EE
Sbjct: 278 LYYVDTEQFSNPQYEE 293
>DQ000307-1|AAY21180.1| 423|Apis mellifera major royal jelly
protein 9 protein.
Length = 423
Score = 21.4 bits (43), Expect = 4.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 64 TGLYEYDVLAYVDSVEFDGKQFEEFVQKLILPSSFN 171
+G Y Y +D ++GK F ++ +PSS N
Sbjct: 57 SGEYNYKNNVPIDVDRWNGKTFVTILRNDGVPSSLN 92
Score = 21.0 bits (42), Expect = 5.6
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 163 SFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNWKIFCNGFIYDKKSKA 330
SFN +LY++ + K Y +F VK + WK F F D+K +A
Sbjct: 2 SFNIWWLILYFSIVCQAKAH-YSLRDFKANIFQVK---YQWKYFDYNFGSDEKRQA 53
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 21.0 bits (42), Expect = 5.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 398 YLIMSNITFLLSVLVTLCNLTYN 330
YL+ + + LSV+VT+ L N
Sbjct: 302 YLLFTMVLVTLSVVVTIAVLNVN 324
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.6 bits (41), Expect = 7.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +2
Query: 263 SNPTSLIGKFFVTVLFMI 316
S+ LIG +F ++FM+
Sbjct: 251 SDAVPLIGSYFNCIMFMV 268
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.6 bits (41), Expect = 7.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +2
Query: 263 SNPTSLIGKFFVTVLFMI 316
S+ LIG +F ++FM+
Sbjct: 251 SDAVPLIGSYFNCIMFMV 268
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.6 bits (41), Expect = 7.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +2
Query: 263 SNPTSLIGKFFVTVLFMI 316
S+ LIG +F ++FM+
Sbjct: 251 SDAVPLIGSYFNCIMFMV 268
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 7.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +2
Query: 263 SNPTSLIGKFFVTVLFMI 316
S+ LIG +F ++FM+
Sbjct: 319 SDAVPLIGSYFNCIMFMV 336
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 20.6 bits (41), Expect = 7.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -3
Query: 398 YLIMSNITFLLSVLVTLCNL 339
YL+ + I LS+ +T+C L
Sbjct: 315 YLLFTMILVTLSIWITVCVL 334
>AY588474-1|AAT94401.1| 104|Apis mellifera defensin 2 protein.
Length = 104
Score = 20.2 bits (40), Expect = 9.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 138 KLFKLFAIKLHTVHVS 91
K F LFAI + VH S
Sbjct: 2 KFFVLFAILIAIVHAS 17
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 20.2 bits (40), Expect = 9.9
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +1
Query: 163 SFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNWK 288
S+ + Y E SK ++ K E + E + S N+K
Sbjct: 282 SYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNNYK 323
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 20.2 bits (40), Expect = 9.9
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +2
Query: 257 AGSNPTSLIGKFFVTVLFMI 316
A S+ L+G +F ++FM+
Sbjct: 286 ATSDAVPLLGTYFNCIMFMV 305
>AY217747-1|AAP45005.1| 246|Apis mellifera short-chain
dehydrogenase/reductase protein.
Length = 246
Score = 20.2 bits (40), Expect = 9.9
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -3
Query: 296 QKIFQLNLLDLT 261
+KIF +NLL LT
Sbjct: 109 KKIFDINLLGLT 120
>AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein.
Length = 316
Score = 20.2 bits (40), Expect = 9.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 263 SNPTSLIGKFFVTVLFMIKNQKRCMLN 343
++P L KF+ ++KN KR L+
Sbjct: 2 ASPQKLANKFYRISPQILKNDKRIYLS 28
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,157
Number of Sequences: 438
Number of extensions: 1867
Number of successful extensions: 20
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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