Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29h20
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    99   3e-21
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 58/201 (28%), Positives = 96/201 (47%)
 Frame = +3

Query: 30  DQAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLL 209
           D  QF +L+  L S DNDIR QAE+ Y  I   TKV  L  +  +     D R T  V L
Sbjct: 2   DVNQFTELITKLQSADNDIRKQAEEVYEKIEGPTKVAALFEAYTHHTNNSDARSTVLVFL 61

Query: 210 RRLFSAXXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGN 389
           RR+ +              +  +  ++L  +  +    +++K+ D++SE+A N IDD G+
Sbjct: 62  RRVLARDWDAIWETLNEENKQRILAKVLEMIVHETELSIKKKIADLISEIASNLIDDSGD 121

Query: 390 NQWPEFLQFMFTCASAQDPNIKEAGIRMFTSVPGVFGNRQTENLDVIKGMLISALQPNES 569
             W   L+ M  C  ++D       + +    P +FGNR    L  +K +++        
Sbjct: 122 MTWGGVLELMDHCLKSEDLTGNYIALLILRGCPIIFGNRLAHFLPTLK-VVLEKCMATPD 180

Query: 570 MALRTQAVKAVGAFILLHDKE 632
           + ++  AV+AV AF + +D+E
Sbjct: 181 LQIKATAVRAVIAFAVDNDEE 201


>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
            D2045.2 protein.
          Length = 1792

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +3

Query: 291  LLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIR 470
            LL    D    +R   C  +S+L R H   + +   PE+L+ +         +++EA  R
Sbjct: 1123 LLPALTDREYRVRESACLALSDLLRGHDTVEMHKMIPEYLEAILRVRDDVKESVREAADR 1182

Query: 471  MFTSV 485
               S+
Sbjct: 1183 AADSI 1187


>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
            protein Y54E2A.6 protein.
          Length = 1798

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 445  QTSKKLVLE-CLRLYQVYLEIVRLKTWM 525
            +T  K VL+ C+R+ Q   E+ RLK W+
Sbjct: 1546 RTDLKSVLDQCIRILQAMREMARLKNWL 1573


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,814,518
Number of Sequences: 27780
Number of extensions: 308616
Number of successful extensions: 862
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)