Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29h18
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.5  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   4.5  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   4.5  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   6.0  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   7.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
 Frame = +2

Query: 68  EYKNKMVLIAATVCTKSGK-ALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESV 244
           E  NK +    +  TK+ K  L S+ F +  K + + ++   PK  T     +   T +V
Sbjct: 669 EAPNKTLPSLPSTLTKNSKQGLFSKLFAKKVK-KDKDIILNVPKEST----QSLTTTGNV 723

Query: 245 RYVYQPLDKLYMLLITTKASNI-LEDLETLRLFSRVVPEYCVQLTETE 385
            Y+          L   +AS +    +++LRL     P Y ++LTE E
Sbjct: 724 SYLTTNNTSNNSQLQIPRASLVSTTSVKSLRLEGDETPPYGMELTEAE 771


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 269 KLYMLLITTKASNILEDLETLRLFSRVVPEY 361
           K+Y  L +   SNI   L  L+L+   VPEY
Sbjct: 250 KIY--LFSGHESNIASVLHALQLYYPHVPEY 278


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 269 KLYMLLITTKASNILEDLETLRLFSRVVPEY 361
           K+Y  L +   SNI   L  L+L+   VPEY
Sbjct: 265 KIY--LFSGHESNIASVLHALQLYYPHVPEY 293


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 351 YQNIVYSSQKLKS*TRPSICYLLSTRLSLLGTE 449
           Y+ +V    K K+    S+C  L+  LSL  TE
Sbjct: 17  YEQLVALENKFKTTRYLSVCERLNLALSLSLTE 49


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 83 SCFYILISNFHKKHQ 39
          SC+Y L  +F  KH+
Sbjct: 16 SCYYSLKRHFQDKHE 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,541
Number of Sequences: 438
Number of extensions: 3081
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)