Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29h11
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   1.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   1.4  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   5.7  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   7.5  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   7.5  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   10.0 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   10.0 
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    25   10.0 

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 378  RIDRLLFETLFREFAQQSVSG 440
            R++ LL +  FREFA+ SVSG
Sbjct: 1600 RVEPLLVKDTFREFAEASVSG 1620


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
 Frame = +1

Query: 70   DVINENNLITQIFVQFFYNL-----ICDKAYSLYTKRDM---CVPFVKECKKATIGLRQE 225
            DVI E   I+  +  FF        +C++    +    +   C+P +      T+GL++ 
Sbjct: 786  DVIQERPKISYDWFDFFLRCGVDFTVCNRYTHNFNNEHLDEACIPSLNPDTLRTLGLKEG 845

Query: 226  DHERVLSILNAQCNGFST 279
            D  RV++ +N + NG ST
Sbjct: 846  DIIRVMNHVN-ELNGVST 862


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 390 LLFETLFREFAQQSVSGSGV 449
           + F++  R+FA+QS+ GSGV
Sbjct: 358 IYFDSKTRKFAKQSLDGSGV 377


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = -2

Query: 365 LLTFFMLVLRPIFIIKFLNGSNSLFPLAAV-EKPLHCAFKILNTRS*SSWRNPMVAFLHS 189
           LLT F L    ++ I  ++ SNS FP + +  K LH        +  SS  N  ++ LH+
Sbjct: 7   LLTSFNLWSHGVYKISSISLSNSFFPHSFMFVKSLHLMTSQHIFKCLSSC-NYALSILHN 65

Query: 188 --LTNGTHMSRFVYKEYALSQIKL 123
             L +  ++S+  Y  + L+ ++L
Sbjct: 66  ICLASFLYLSKCYYHTHILTSVRL 89


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = +1

Query: 55   YKNESDVINENNLITQIFVQFFYNLICDKAYSLYTKRDMCVPFVKECKKA-TIGLRQEDH 231
            Y+     I  N  ++ + +QF   ++  K+ ++    D C+  V+    A  IG   +  
Sbjct: 963  YRLVLQTIGSNRFLSVVLIQFAEKMLLAKSTNVVAIHDFCLTLVQSFSVADRIGSINQCS 1022

Query: 232  ERVLSILNAQCNGFS 276
               L  L  Q N  S
Sbjct: 1023 RFCLKSLEEQSNSDS 1037


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 451 PTPLPDTLCWANSLNSVSNKSRSIRWTL 368
           P+ + DTL  A + NS SN S +  W +
Sbjct: 217 PSVISDTLAVAITSNSSSNSSNNAIWAM 244


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 249 NTQHALVILLAQSDGCFFAFFDKWHAHVAFCVQRI 145
           N   AL +LL+ S       F  W + V++C Q I
Sbjct: 127 NFSKALRLLLSHSPHLHHLRFSDWQSLVSYCCQAI 161


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 217 RQEDHERVLSILNAQCNGFSTAANGNRLLLPFKNFMIKMGRNTNMKKVN 363
           +++D    LSIL   C GF+       +++PF+   I++    N  K N
Sbjct: 98  KRKDSSPALSILTGSCAGFTETF----VVVPFELMKIRLQDVKNASKYN 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,046
Number of Sequences: 5004
Number of extensions: 41785
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)