Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc29h06
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    29   0.35 
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    27   1.4  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   4.4  
SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|ch...    26   4.4  
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   5.8  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   7.6  

>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 498 SRQPRRFLKFPSPVAAIRFRQHDETSSQPKLAFRRQKLEIQ 376
           S +P++ +K  S +++IRF QH+  +   K+     K +I+
Sbjct: 141 SAEPKKHVKLNSSISSIRFTQHEFEAESEKIIHHSLKGDIE 181


>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 444 FRQHDETSSQPKLAFRRQKLEIQCAV 367
           F+ HDE ++ P L +R+ K  I C +
Sbjct: 47  FQCHDELNTHPFLPWRKAKFHIPCVI 72


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 368 FLLCFIIHDCRWQIAKHKAFIAHVEIKTSVFEFQR 264
           FL+  I    +W   +HKAF+    I+++ FE  R
Sbjct: 298 FLISSIYEIWKWCRIRHKAFLLDEHIRSNKFEDTR 332


>SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 190

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = -3

Query: 382 DPMRSFCFVSLFTIAAGKLPNTKRLLHTWKLKQVFSSFNGSKLPSSLKTLIIVFNTSCVK 203
           +P      +S+F +   ++ +  R    W L+ ++++ N   LP  + +L I+ + + +K
Sbjct: 11  NPQTKSIGISIFLMMITRVIDFSRPSLLWPLRILYATINEFNLPWFIYSLTIL-DLTVLK 69

Query: 202 IIELTTP 182
            +E  TP
Sbjct: 70  YVEPATP 76


>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 238

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
 Frame = -2

Query: 356 FIIHDCRWQIAK------HKAFIAHVEIKTSVFEFQ 267
           F+I  C W I +         FI H  +   VFEFQ
Sbjct: 182 FLITSCNWTIQELEERFTKNGFIVHSTVPVPVFEFQ 217


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
 Frame = +3

Query: 66   DPTNKIVIEQVDNVDAFVHIL--EPGQEVFDETLSRYHQF-------PGVVSSII--FTQ 212
            D  +K++I+   ++   V I+  E      D T+  YH F       P  + ++   FTQ
Sbjct: 784  DIIDKVLIDMCSSIQNSVVIINEESFMNNIDITVELYHFFSIILQKHPSFLETMYPDFTQ 843

Query: 213  LVLNTIISVLSEDGSLL 263
            L+LN  I++L +   LL
Sbjct: 844  LILNRAINLLGKPERLL 860


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,369
Number of Sequences: 5004
Number of extensions: 47666
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)